YRC Public Data Repository - Protein Structure Prediction

Protein:	TKN1_BOVIN
Organism:	Bos taurus
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TKN1_BOVIN.

Description	E-value	Query Range	Subject Range
TKN1_RAT - Protachykinin-1 OS=Rattus norvegicus GN=Tac1 PE=2 SV=2	250.0	[0..1]	[130..1]
gi\|73975838 - gi\|73975838\|ref\|XP_850435.1\| PREDICTED: similar to Protachykinin 1 precursor (PPT) isoform 3 [Canis ...	249.0	[0..1]	[130..1]
gi\|109067409 - gi\|109067409\|ref\|XP_001089871.1\| PREDICTED: tachykinin, precursor 1 (substance K, substance P, neuro...	248.0	[0..1]	[129..1]
TAC1 - tachykinin, precursor 1 gi\|123982550, gi... - gi\|60823658\|gb\|AAX36651.1\| tachykinin precursor 1 [synthetic construct], gi\|123997215\|gb\|ABM86209.1\|...	246.0	[0..1]	[129..1]
TKN1_MOUSE - Protachykinin-1 OS=Mus musculus GN=Tac1 PE=2 SV=1	246.0	[0..1]	[130..1]
TKN1_MESAU - Protachykinin-1 OS=Mesocricetus auratus GN=TAC1 PE=2 SV=1	245.0	[0..1]	[130..1]
gi\|114614668 - gi\|114614668\|ref\|XP_001171112.1\| PREDICTED: tachykinin 1 isoform 4 [Pan troglodytes]	245.0	[0..1]	[129..1]
gi\|4454350 - gi\|4454350\|emb\|CAA90649.1\| beta preprotachykinin I [Tupaia belangeri]	243.0	[0..1]	[129..1]
gi\|4454091 - gi\|4454091\|emb\|CAA90647.1\| beta preprotachykinin I [Cavia porcellus]	240.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILVAVAVI FFISTQLSAE EIGANDDFNY WSDWSDSDQI KEEMPEPFEH LLQRIARRPK  60
   61 PQQFFGLMGK RDADSSIEKQ VALLKALYGH GQLSHKRHKT DSFVGLMGKR ALNSVAYERS 120
  121 VMQDYERRRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits