YRC Public Data Repository - Protein Structure Prediction

Protein:	THIS_ECOLI
Organism:	Escherichia coli
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THIS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|71736786, gi\|... - gi\|71736786\|ref\|YP_276875.1\| sulfur carrier protein ThiS [Pseudomonas syringae pv. phaseolicola 1448...	98.0	[0..1]	[66..25]
gi\|115421549, gi... - gi\|187476963\|ref\|YP_784987.1\| thiamine biosynthesis protein [Bordetella avium 197N], gi\|115421549\|em...	95.0	[0..1]	[66..1]
gi\|82716740, gi\|... - gi\|82736097\|ref\|ZP_00898957.1\| ThiS, thiamine-biosynthesis [Pseudomonas putida F1], gi\|82716740\|gb\|E... gi\|26991781, gi\|... - gi\|26991781\|ref\|NP_747206.1\| sulfur carrier protein ThiS [Pseudomonas putida KT2440], gi\|24986891\|gb...	95.0	[0..1]	[66..27]
gi\|218769344, gi... - gi\|218889121\|ref\|YP_002437985.1\| sulfur carrier protein ThiS [Pseudomonas aeruginosa LESB58], gi\|218... gi\|11347646 - pir\|\|D83599 conserved hypothetical protein PA0380 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|126169316, gi... - gi\|84318594\|ref\|ZP_00967016.1\| COG2104: Sulfur transfer protein involved in thiamine biosynthesis [P... gi\|115589331, gi... - gi\|32043554\|ref\|ZP_00140816.1\| COG2104: Sulfur transfer protein involved in thiamine biosynthesis [P... gi\|84324466, gi\|... - gi\|84324466\|ref\|ZP_00972524.1\| COG2104: Sulfur transfer protein involved in thiamine biosynthesis [P... gi\|107099365 - gi\|107099365\|ref\|ZP_01363283.1\| hypothetical protein PaerPA_01000377 [Pseudomonas aeruginosa PACS2] gi\|9946232, gi\|1... - gi\|9946232\|gb\|AAG03769.1\|AE004475_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], g...	95.0	[0..1]	[66..1]
gi\|70733136, gi\|... - gi\|70733136\|ref\|YP_262909.1\| sulfur carrier protein ThiS [Pseudomonas fluorescens Pf-5], gi\|68347435...	93.0	[0..1]	[66..12]
THIG_MAGSA - Thiazole synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=thiG PE=3 SV=1	93.0	[0..1]	[66..1]
gi\|23102633, gi\|... - gi\|67154907\|ref\|ZP_00416652.1\| ThiS, thiamine-biosynthesis [Azotobacter vinelandii AvOP], ref\|ZP_000... gi\|67089040, gi\|... - gi\|67154907\|ref\|ZP_00416652.1\| ThiS, thiamine-biosynthesis [Azotobacter vinelandii AvOP], gi\|6708904...	93.0	[0..1]	[66..1]
gi\|94414782, gi\|... - gi\|94414782\|ref\|ZP_01294636.1\| hypothetical protein PaerP_01003362 [Pseudomonas aeruginosa PA7], gi\|...	93.0	[0..1]	[66..1]
gi\|78195384, gi\|... - gi\|78224129\|ref\|YP_385876.1\| ThiS, thiamine-biosynthesis [Geobacter metallireducens GS-15], gi\|78195...	92.0	[0..1]	[66..34]
gi\|49082326 - gi\|49082326\|gb\|AAT50563.1\| PA0380 [synthetic construct]	92.0	[0..1]	[66..1]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQILFNDQAM QCAAGQTVHE LLEQLDQRQA GAALAINQQI VPREQWAQHI VQDGDQILLF  60
   61 QVIAGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1f0zA
Description:	Thiamin biosynthesis sulfur carrier protein ThiS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits