YRC Public Data Repository - Protein Structure Prediction

Protein:	THIO_ECOLI
Organism:	Escherichia coli
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THIO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	163.0	[0..1]	[107..40]
gi\|25067747 - gi\|25067747\|gb\|AAN65341.1\| thioredoxin/transketolase fusion protein [synthetic construct]	163.0	[0..1]	[108..2]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	162.0	[0..1]	[107..40]
gi\|110617077, gi... - gi\|110807529\|ref\|YP_691049.1\| thioredoxin [Shigella flexneri 5 str. 8401], gi\|110617077\|gb\|ABF05744.... gi\|68304124\|gb\|A... - TrxA [Escherichia coli] gi\|110644108, gi... - gi\|110644108\|ref\|YP_671838.1\| thioredoxin [Escherichia coli 536], gi\|110345700\|gb\|ABG71937.1\| thiore... gi\|68304124 - gi\|68304124\|gb\|AAY89720.1\| TrxA [Escherichia coli] tr\|A0A0G3HR77\|A0... - Thioredoxin 1 protein OS=Escherichia coli (strain K12) GN=trxA PE=4 SV=1 gi\|26250519, gi\|... - gi\|26250519\|ref\|NP_756559.1\| thioredoxin [Escherichia coli CFT073], gi\|26110949\|gb\|AAN83133.1\|AE0167... gi\|91213301, gi\|... - gi\|91213301\|ref\|YP_543287.1\| thioredoxin [Escherichia coli UTI89], gi\|91074875\|gb\|ABE09756.1\| thiore... gi\|24115074, gi\|... - ref\|NP_709584.1\| thioredoxin 1 [Shigella flexneri 2a str. 301], gb\|AAN45291.1\| thioredoxin 1 [Shige...	161.0	[0..1]	[108..37]
gi\|575449 - gi\|575449\|gb\|AAA67270.1\| Derived from E. coli thioredoxin gene; normal translation termination codon...	161.0	[0..1]	[108..2]
gi\|237702791, gi... - gi\|237702791\|ref\|ZP_04533272.1\| thioredoxin 1 [Escherichia sp. 3_2_53FAA], gi\|226902962\|gb\|EEH89221.... gi\|148185\|gb\|AAA... - thioredoxin [Escherichia coli] gi\|227888636, gi... - gi\|227888636\|ref\|ZP_04006441.1\| thioredoxin [Escherichia coli 83972], gi\|227834475\|gb\|EEJ44941.1\| th... gi\|226838684, gi... - gi\|254038993\|ref\|ZP_04873044.1\| thioredoxin 1 [Escherichia sp. 1_1_43], gi\|226838684\|gb\|EEH70712.1\| ... gi\|209753510, gi... - gi\|25282746\|pir\|\|C86064 thioredoxin 1 [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|30043185, gi\|... - gi\|30064924\|ref\|NP_839095.1\| thioredoxin [Shigella flexneri 2a str. 2457T], gi\|30043185\|gb\|AAP18906.... gi\|15833968, gi\|... - gi\|15833968\|ref\|NP_312741.1\| thioredoxin [Escherichia coli O157:H7], gi\|13364189\|dbj\|BAB38137.1\| thi... gi\|1790215, gi\|1... - gb\|AAC76786.1\| thioredoxin 1; thioredoxin 1, redox factor [Escherichia coli K12], ref\|NP_418228.1\| ... gi\|12518641, gi\|... - gi\|15804371\|ref\|NP_290411.1\| thioredoxin [Escherichia coli O157:H7 EDL933], gi\|12518641\|gb\|AAG58975.... gi\|81247546, gi\|... - gi\|82546135\|ref\|YP_410082.1\| thioredoxin [Shigella boydii Sb227], gi\|81247546\|gb\|ABB68254.1\| thiored... gi\|56480434, gi\|... - gi\|56480434\|ref\|NP_709584.2\| thioredoxin [Shigella flexneri 2a str. 301], gi\|56383985\|gb\|AAN45291.2\|... gi\|74314295, gi\|... - gi\|74314295\|ref\|YP_312714.1\| thioredoxin [Shigella sonnei Ss046], gi\|73857772\|gb\|AAZ90479.1\| thiored... gi\|81243186, gi\|... - gi\|82779038\|ref\|YP_405387.1\| thioredoxin [Shigella dysenteriae Sd197], gi\|81243186\|gb\|ABB63896.1\| th... gi\|15833968, gi\|... - gi\|15833968\|ref\|NP_312741.1\| thioredoxin [Escherichia coli O157:H7 str. Sakai], gi\|13364189\|dbj\|BAB3...	161.0	[0..1]	[108..20]
gi\|110593092, gi... - gi\|110593092\|ref\|ZP_01381446.1\| thioredoxin [Acidovorax sp. JS42], gi\|110337599\|gb\|EAT57311.1\| thior...	159.0	[0..1]	[108..24]
gi\|95928472, gi\|... - gi\|95928472\|ref\|ZP_01311219.1\| thioredoxin [Desulfuromonas acetoxidans DSM 684], gi\|95135262\|gb\|EAT1...	159.0	[0..1]	[107..3]
gi\|62130024, gi\|... - gi\|62182391\|ref\|YP_218808.1\| thioredoxin [Salmonella enterica subsp. enterica serovar Choleraesuis s...	159.0	[0..1]	[108..28]
gi\|25282752 - pir\|\|AD0471 thioredoxin 1 [imported] - Yersinia pestis (strain CO92) gi\|45437796, gi\|... - gi\|45442929\|ref\|NP_994468.1\| thioredoxin 1 [Yersinia pestis biovar Microtus str. 91001], gi\|45437796... gi\|21957044, gi\|... - gi\|22124275\|ref\|NP_667698.1\| thioredoxin 1 [Yersinia pestis KIM], gi\|21957044\|gb\|AAM83949.1\|AE013636... gi\|149289382, gi... - gi\|153997076\|ref\|ZP_02022209.1\| thioredoxin 1 [Yersinia pestis CA88-4125], gi\|149289382\|gb\|EDM39460.... gi\|15981783, gi\|... - gi\|218930871\|ref\|YP_002348746.1\| thioredoxin 1 [Yersinia pestis CO92], gi\|16124003\|ref\|NP_407316.1\| ... gi\|167055055, gi... - gi\|167425907\|ref\|ZP_02317660.1\| thioredoxin [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|1... gi\|51587804, gi\|... - gi\|51594522\|ref\|YP_068713.1\| thioredoxin 1 [Yersinia pseudotuberculosis IP 32953], gi\|51587804\|emb\|C... gi\|167420843, gi... - gi\|167420843\|ref\|ZP_02312596.1\| thioredoxin [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|1... gi\|186893520, gi... - gi\|186893520\|ref\|YP_001870632.1\| thioredoxin [Yersinia pseudotuberculosis PB1/+], gi\|186696546\|gb\|AC... gi\|169752779, gi... - gi\|170026245\|ref\|YP_001722750.1\| thioredoxin [Yersinia pseudotuberculosis YPIII], gi\|169752779\|gb\|AC... gi\|89103427, gi\|... - gi\|89103427\|ref\|ZP_01176005.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pestis ... Q66G18\|Q66G18_YERPS - Thioredoxin 1 - Yersinia pseudotuberculosis gi\|108806148, gi... - gi\|108806148\|ref\|YP_650064.1\| thioredoxin 1 [Yersinia pestis Antiqua], gi\|108778061\|gb\|ABG12119.1\| t... gi\|229682448, gi... - gi\|229900429\|ref\|ZP_04515558.1\| thioredoxin 1 [Yersinia pestis Nepal516], gi\|229682448\|gb\|EEO78535.1... gi\|229837201, gi... - gi\|229837201\|ref\|ZP_04457366.1\| thioredoxin 1 [Yersinia pestis Pestoides A], gi\|229706144\|gb\|EEO9215... gi\|229695927, gi... - gi\|229839561\|ref\|ZP_04459720.1\| thioredoxin 1 [Yersinia pestis biovar Orientalis str. PEXU2], gi\|229... gi\|229686904, gi... - gi\|229900124\|ref\|ZP_04515261.1\| thioredoxin 1 [Yersinia pestis biovar Orientalis str. India 195], gi... gi\|166009693, gi... - gi\|166009693\|ref\|ZP_02230591.1\| thioredoxin [Yersinia pestis biovar Antiqua str. E1979001], gi\|16599... gi\|165921813, gi... - gi\|165926289\|ref\|ZP_02222121.1\| thioredoxin [Yersinia pestis biovar Orientalis str. F1991016], gi\|16... gi\|167402076, gi... - gi\|167402076\|ref\|ZP_02307555.1\| thioredoxin [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1670... gi\|166205236, gi... - gi\|166213563\|ref\|ZP_02239598.1\| thioredoxin [Yersinia pestis biovar Antiqua str. B42003004], gi\|1662... gi\|162354023, gi... - gi\|77634499\|ref\|ZP_00796598.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pestis ... gi\|152961526, gi... - gi\|77630765\|ref\|ZP_00793351.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pseudot...	158.0	[0..1]	[107..2]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDKIIHLTDD SFDTDVLKAD GAILVDFWAE WCGPCKMIAP ILDEIADEYQ GKLTVAKLNI  60
   61 DQNPGTAPKY GIRGIPTLLL FKNGEVAATK VGALSKGQLK EFLDANLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	2h71A
Description:	No description for 2h71A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits