YRC Public Data Repository - Protein Structure Prediction

Protein:	THIE_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	343 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for THIE_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|23130348 - gi\|23130348\|ref\|ZP_00112165.1\| COG0352: Thiamine monophosphate synthase [Nostoc punctiforme PCC 7310...	340.0	[0..3]	[343..29]
THIE_NOSS1 - Thiamine-phosphate synthase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=thiE PE=3 SV=2	328.0	[0..2]	[343..8]
gi\|75911243, gi\|... - gi\|75911243\|ref\|YP_325539.1\| thiamine-phosphate pyrophosphorylase [Anabaena variabilis ATCC 29413], ...	323.0	[0..2]	[343..36]
gi\|48891748, gi\|... - gi\|71674938\|ref\|ZP_00672684.1\| Thiamine monophosphate synthase [Trichodesmium erythraeum IMS101], gi...	323.0	[0..1]	[341..7]
gi\|67922607, gi\|... - gi\|67922607\|ref\|ZP_00516113.1\| Thiamine monophosphate synthase [Crocosphaera watsonii WH 8501], gi\|6...	321.0	[0..7]	[339..5]
THIE_THEEB - Thiamine-phosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=thiE PE=3 SV=2 THIE_SYNEL - Thiamine-phosphate pyrophosphorylase OS=Synechococcus elongatus GN=thiE PE=3 SV=2	299.0	[0..4]	[343..8]
gi\|22295673, gi\|... - gi\|22299490\|ref\|NP_682737.1\| thiamine-phosphate pyrophosphorylase [Thermosynechococcus elongatus BP-...	299.0	[0..4]	[343..14]
gi\|81299866, gi\|... - gi\|81299866\|ref\|YP_400074.1\| thiamine-phosphate pyrophosphorylase [Synechococcus elongatus PCC 7942]...	298.0	[0..5]	[338..10]
gi\|56685459, gi\|... - gi\|56750500\|ref\|YP_171201.1\| thiamine-phosphate pyrophosphorylase [Synechococcus elongatus PCC 6301]...	298.0	[0..5]	[338..10]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQASPTAIA RILDANLNRA REGLRTVEEW CRFALENREL AEECKQLRQA LAPWHQDDLR  60
   61 AARDTPNDVG TQLTHAQEAL RTDVRALLQA NLCRVEEALR VLEEYGKLRD PAMGACCKQL 120
  121 RYRVYALESG L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [132-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGSKLVQRLQ QCSLYLVTSP QENLLATVEA ALQGGLKLVQ YRDKDAEDQL RWQRAKDLRE  60
   61 LCRQYEALFL VNDRVDLALA VDADGVHLGQ QDLPIAVARQ LLGPDKIIGR STTNPEEMAK 120
  121 AIAEGADYIG VGPVYATPTK AGKKPAGLEY VQYAVTNSPV PWFAIGGIDG ENLGEVMEAG 180
  181 ATQVAIVRAI METTNPTQAT AQLLTQLSRI NP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	1xi3A
Description:	Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits