YRC Public Data Repository - Protein Structure Prediction

Protein:	pcm-1
Organism:	Caenorhabditis elegans
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pcm-1.

Description	E-value	Query Range	Subject Range
PIMT_DANRE - Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3	193.0	[0..1]	[219..1]
gi\|47222412 - gi\|47222412\|emb\|CAG12932.1\| unnamed protein product [Tetraodon nigroviridis]	193.0	[0..1]	[219..43]
gi\|115974015, gi... - gi\|115974015\|ref\|XP_001189051.1\| PREDICTED: similar to L-isoaspartyl protein carboxyl methyltransfer...	192.0	[0..1]	[217..1]
gi\|71896055, gi\|... - gi\|71896055\|ref\|NP_001025616.1\| protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 [Xenopus ...	192.0	[0..1]	[219..1]
gi\|88512, gi\|133... - pir\|\|JH0624 protein-L-isoaspartate(D-aspartate) O-methyltransferase (EC 2.1.1.77) splice form II - h...	191.0	[0..1]	[219..1]
gi\|109072409 - gi\|109072409\|ref\|XP_001083841.1\| PREDICTED: protein-L-isoaspartate (D-aspartate) O-methyltransferase...	191.0	[0..1]	[219..1]
gi\|114609746 - gi\|114609746\|ref\|XP_001173392.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	190.0	[0..1]	[219..59]
gi\|55250551, gi\|... - gi\|55250551\|gb\|AAH86277.1\| LOC495685 protein [Xenopus laevis], gi\|148230102\|ref\|NP_001088633.1\| hypo...	190.0	[0..1]	[219..1]
gi\|19070126 - gi\|19070126\|gb\|AAL83718.1\|AF239700_1 protein carboxyl-o-methyltransferase [Sus scrofa domestica] PIMT_PIG - Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3	189.0	[0..1]	[218..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWRSSGSTN SELIDNLRNN RVFASQRAYD AMKSVDRGDF APRAPYEDAP QRIGYNATHA  60
   61 AALDYLQNHL VAGAKALDVG SGSGYLTVCM AMMVGRNGTV VGIEHMPQLV ELSEKNIRKH 120
  121 HSEQLERGNV IIIEGDGRQG FAEKAPYNAI HVGAASKGVP KALTDQLAEG GRMMIPVEQV 180
  181 DGNQVFMQID KINGKIEQKI VEHVIYVPLT SREEQWNRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.045757
Match:	1i1nA
Description:	Protein-L-isoaspartyl O-methyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits