YRC Public Data Repository - Protein Structure Prediction

Protein:	TFAS_ECOLI
Organism:	Escherichia coli
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFAS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|16128544, gi\|... - gb\|AAC73662.1\| orf, hypothetical protein; DLP12 prophage; putative tail fiber assembly gene [Escheri... TFAD_ECOLI - Tail fiber assembly protein homolog from lambdoid prophage DLP12 - Escherichia coli	163.0	[0..7]	[112..140]
gi\|90111150, gi\|... - gi\|90111150\|ref\|NP_415093.2\| DLP12 prophage; predicted tail fiber assembly protein (pseudogene) [Esc...	162.0	[0..7]	[112..80]
gi\|168762597, gi... - gi\|189367191\|gb\|EDU85607.1\| tail fiber assembly protein [Escherichia coli O157:H7 str. EC4501], gi\|1... gi\|217328533, gi... - gi\|217328533\|ref\|ZP_03444615.1\| tail fiber assembly protein [Escherichia coli O157:H7 str. TW14588],... gi\|25301994, gi\|... - pir\|\|E85693 probable tail fiber protein of prophage CP-933X Z1920 [imported] - Escherichia coli (str... gi\|13361115, gi\|... - gi\|15830905\|ref\|NP_309678.1\| tail fiber assembly protein [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|12514849, gi\|... - gi\|15801380\|ref\|NP_287397.1\| putative tail fiber protein of prophage CP-933X [Escherichia coli O157:... gi\|13361115, gi\|... - gi\|15830905\|ref\|NP_309678.1\| tail fiber assembly protein [Escherichia coli O157:H7], gi\|13361115\|dbj...	159.0	[0..7]	[113..87]
gi\|83569528, gi\|... - gi\|83569528\|ref\|ZP_00920980.1\| hypothetical protein Sdys1_01002184 [Shigella dysenteriae 1012], gi\|1...	157.0	[0..7]	[114..87]
gi\|75196635 - gi\|75196635\|ref\|ZP_00706705.1\| COG0052: Ribosomal protein S2 [Escherichia coli HS]	156.0	[0..7]	[112..83]
gi\|193063416, gi... - gi\|75258705\|ref\|ZP_00730112.1\| hypothetical protein EcolE2_01001651 [Escherichia coli E22], gi\|19306...	156.0	[0..7]	[112..87]
gi\|193067605, gi... - gi\|75238940\|ref\|ZP_00722922.1\| COG0747: ABC-type dipeptide transport system, periplasmic component [...	155.0	[0..7]	[112..87]
TFA_LAMBD - Tail fiber assembly protein OS=Enterobacteria phage lambda GN=tfa PE=1 SV=1	155.0	[0..7]	[112..87]
gi\|36785369, gi\|... - gi\|37525940\|ref\|NP_929284.1\| hypothetical protein plu2023 [Photorhabdus luminescens subsp. laumondii...	154.0	[0..2]	[112..383]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILDRHITSR GYVCMRPATI APLTPYDKWD GEKWVTDTEA QHSVAVDAAE AQRQSLIDTA  60
   61 MASISLIQLK LQAGRKLMQA ETSRLNTVLD YIDAVTATDT STAPDVIWPE LPEE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.008774
Match:	PF02413.8
Description:	No description for PF02413.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.897	N/A	N/A	a.7.1	Spectrin repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits