YRC Public Data Repository - Protein Structure Prediction

Protein:	TDH_ECOLI
Organism:	Escherichia coli
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDH_ECOLI.

Description	E-value	Query Range	Subject Range
TDH_YERPS - L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=tdh PE=3 S... TDH_YERP3 - L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tdh PE... TDH_YERPS - L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis GN=tdh PE=3 SV=1 TDH_YERPY - L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tdh PE=3 S... TDH_YERPB - L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tdh PE=3 SV...	339.0	[0..1]	[341..1]
gi\|77972948 - gi\|77972948\|ref\|ZP_00828502.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena...	339.0	[0..1]	[341..6]
gi\|77976343, gi\|... - gi\|77976343\|ref\|ZP_00831840.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena...	338.0	[0..1]	[341..1]
gi\|165936189, gi... - gi\|89103910\|ref\|ZP_01176470.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena... gi\|150260876, gi... - gi\|150260876\|ref\|ZP_01917604.1\| threonine 3-dehydrogenase [Yersinia pestis CA88-4125], gi\|149290284\|... TDH_YERPA - L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tdh PE=3 SV=1 TDH_YERPP - L-threonine 3-dehydrogenase OS=Yersinia pestis (strain Pestoides F) GN=tdh PE=3 SV=1 TDH_YERPN - L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tdh PE=3 SV=1 TDH_YERPE - L-threonine 3-dehydrogenase OS=Yersinia pestis GN=tdh PE=3 SV=1 gi\|167426658, gi... - gi\|167426658\|ref\|ZP_02318411.1\| L-threonine 3-dehydrogenase [Yersinia pestis biovar Mediaevalis str.... gi\|167469350 - gi\|167469350\|ref\|ZP_02334054.1\| L-threonine 3-dehydrogenase [Yersinia pestis FV-1] gi\|22124000, gi\|... - gi\|22124000\|ref\|NP_667423.1\| L-threonine 3-dehydrogenase [Yersinia pestis KIM], gi\|21956741\|gb\|AAM83... gi\|218927281, gi... - gi\|218927281\|ref\|YP_002345156.1\| L-threonine 3-dehydrogenase [Yersinia pestis CO92], gi\|16120413\|ref... gi\|45434781, gi\|... - gi\|45439926\|ref\|NP_991465.1\| L-threonine 3-dehydrogenase [Yersinia pestis biovar Microtus str. 91001... gi\|229706621, gi... - gi\|229836173\|ref\|ZP_04456341.1\| threonine 3-dehydrogenase, NAD(P)-binding [Yersinia pestis Pestoides... gi\|229696275, gi... - gi\|229839909\|ref\|ZP_04460068.1\| threonine 3-dehydrogenase, NAD(P)-binding [Yersinia pestis biovar Or... gi\|229690301, gi... - gi\|229841991\|ref\|ZP_04462146.1\| threonine 3-dehydrogenase, NAD(P)-binding [Yersinia pestis biovar Or... TDH_YERPG - L-threonine 3-dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=tdh PE=3 SV=1 gi\|165926117, gi... - gi\|165926117\|ref\|ZP_02221949.1\| L-threonine 3-dehydrogenase [Yersinia pestis biovar Orientalis str. ... gi\|165989602, gi... - gi\|166011456\|ref\|ZP_02232354.1\| L-threonine 3-dehydrogenase [Yersinia pestis biovar Antiqua str. E19... gi\|166205093, gi... - gi\|166213691\|ref\|ZP_02239726.1\| L-threonine 3-dehydrogenase [Yersinia pestis biovar Antiqua str. B42... gi\|167048092, gi... - gi\|167402537\|ref\|ZP_02307987.1\| L-threonine 3-dehydrogenase [Yersinia pestis biovar Antiqua str. UG0... gi\|167419327, gi... - gi\|167419327\|ref\|ZP_02311080.1\| L-threonine 3-dehydrogenase [Yersinia pestis biovar Orientalis str. ...	338.0	[0..1]	[341..1]
gi\|40795502 - gi\|40795502\|gb\|AAR91477.1\| thermostable alcohol dehydrogenase [Geobacillus sp. M10EXG]	337.0	[0..1]	[341..1]
gi\|194425284, gi... - gi\|83588530\|ref\|ZP_00927154.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena...	337.0	[0..1]	[341..1]
gi\|238783977, gi... - gi\|77958471\|ref\|ZP_00822504.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena...	337.0	[0..1]	[341..1]
gi\|238798822, gi... - gi\|77961966\|ref\|ZP_00825793.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena...	336.0	[0..1]	[341..1]
gi\|30043367, gi\|... - gi\|30065106\|ref\|NP_839277.1\| L-threonine 3-dehydrogenase [Shigella flexneri 2a str. 2457T], gi\|30043... gi\|194414506, gi... - gi\|75211373\|ref\|ZP_00711472.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena... TDH_ECOHS - L-threonine 3-dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=tdh PE=3 SV=1 gi\|251786867, gi... - gi\|251786867\|ref\|YP_003001171.1\| hypothetical protein B21_03425 [Escherichia coli BL21], gi\|24237914... TDH_SHIB3 - L-threonine 3-dehydrogenase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=tdh PE=3 ... gi\|253322585, gi... - gi\|254290296\|ref\|YP_003056044.1\| L-threonine 3-dehydrogenase [Escherichia coli BL21(DE3)], gi\|253979... gi\|24054125, gi\|... - gi\|24114886\|ref\|NP_709396.1\| L-threonine 3-dehydrogenase [Shigella flexneri 2a str. 301], gi\|2405412... gi\|83571409, gi\|... - gi\|83571409\|ref\|ZP_00922849.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena... gi\|124530509, gi... - gi\|124530509\|ref\|ZP_01701136.1\| L-threonine 3-dehydrogenase [Escherichia coli B], gi\|124499150\|gb\|EA... gi\|253975447, gi... - gi\|254163546\|ref\|YP_003046654.1\| L-threonine 3-dehydrogenase [Escherichia coli B str. REL606], gi\|25... TDH_ECO8A - L-threonine 3-dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=tdh PE=3 SV=1 TDH_ECOSE - L-threonine 3-dehydrogenase OS=Escherichia coli (strain SE11) GN=tdh PE=3 SV=1 TDH_ECOL5 - L-threonine 3-dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=tdh PE=3 SV=1 TDH_ECO55 - L-threonine 3-dehydrogenase OS=Escherichia coli (strain 55989 / EAEC) GN=tdh PE=3 SV=1 TDH_SHIFL - L-threonine 3-dehydrogenase OS=Shigella flexneri GN=tdh PE=3 SV=1 gi\|193066084, gi... - gi\|75255834\|ref\|ZP_00727580.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena... gi\|190909214, gi... - gi\|75242598\|ref\|ZP_00726342.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena... gi\|193068495, gi... - gi\|75237558\|ref\|ZP_00721591.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena... gi\|190901827, gi... - gi\|75228681\|ref\|ZP_00715302.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena... TDH_SHIF8 - L-threonine 3-dehydrogenase OS=Shigella flexneri serotype 5b (strain 8401) GN=tdh PE=3 SV=1 TDH_SHIBS - L-threonine 3-dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=tdh PE=3 SV=1 gi\|188487378, gi... - gi\|75514315\|ref\|ZP_00736623.1\| COG1063: Threonine dehydrogenase and related Zn-dependent dehydrogena... TDH_ECOLC - L-threonine 3-dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=tdh PE=3 S...	335.0	[0..1]	[341..1]
sp\|B7ULH2\|TDH_ECO27 - L-threonine 3-dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=tdh PE=3 SV=1 TDH_ECOL6 - L-threonine 3-dehydrogenase OS=Escherichia coli O6 GN=tdh PE=3 SV=1 gi\|237703389, gi... - gi\|237703389\|ref\|ZP_04533870.1\| threonine 3-dehydrogenase [Escherichia sp. 3_2_53FAA], gi\|226902653\|... gi\|227883786, gi... - gi\|227883786\|ref\|ZP_04001591.1\| L-threonine 3-dehydrogenase [Escherichia coli 83972], gi\|227839064\|g... TDH_ECOK1 - L-threonine 3-dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=tdh PE=3 SV=1 TDH_ECOSM - L-threonine 3-dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=tdh PE=3 SV=1 TDH_ECOL6 - L-threonine 3-dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tdh PE... TDH_ECOUT - L-threonine 3-dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=tdh PE=3 SV=1 TDH_ECO7I - L-threonine 3-dehydrogenase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=tdh PE=3 SV=1 TDH_ECO81 - L-threonine 3-dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=tdh PE=3 SV=1 TDH_ECO45 - L-threonine 3-dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=tdh PE=3 SV=1 TDH_ECO27 - L-threonine 3-dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=tdh PE=3 SV=1	335.0	[0..1]	[341..1]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKALSKLKAE EGIWMTDVPV PELGHNDLLI KIRKTAICGT DVHIYNWDEW SQKTIPVPMV  60
   61 VGHEYVGEVV GIGQEVKGFK IGDRVSGEGH ITCGHCRNCR GGRTHLCRNT IGVGVNRPGC 120
  121 FAEYLVIPAF NAFKIPDNIS DDLAAIFDPF GNAVHTALSF DLVGEDVLVS GAGPIGIMAA 180
  181 AVAKHVGARN VVITDVNEYR LELARKMGIT RAVNVAKENL NDVMAELGMT EGFDVGLEMS 240
  241 GAPPAFRTML DTMNHGGRIA MLGIPPSDMS IDWTKVIFKG LFIKGIYGRE MFETWYKMAA 300
  301 LIQSGLDLSP IITHRFSIDD FQKGFDAMRS GQSGKVILSW D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.0
Match:	2dfvA
Description:	No description for 2dfvA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits