YRC Public Data Repository - Protein Structure Prediction

Protein:	TCEA2_MOUSE
Organism:	Mus musculus
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TCEA2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|29437299 - gi\|29437299\|gb\|AAH49617.1\| Tcea2 protein [Mus musculus]	354.0	[0..1]	[299..31]
gi\|119595576 - gi\|119595576\|gb\|EAW75170.1\| transcription elongation factor A (SII), 2, isoform CRA_c [Homo sapiens] gi\|114683105 - gi\|114683105\|ref\|XP_001152294.1\| PREDICTED: transcription elongation factor A protein 2 isoform 1 [P...	352.0	[0..1]	[297..2]
gi\|167773997 - gi\|167773997\|gb\|ABZ92433.1\| transcription elongation factor A (SII), 2 [synthetic construct] gi\|114683101, gi... - gi\|114683103\|ref\|XP_001153063.1\| PREDICTED: transcription elongation factor A protein 2 isoform 10 [... TCEA2 - transcription elongation factor A (SII), 2	350.0	[0..1]	[299..2]
TCEA2_RAT - Transcription elongation factor A protein 2 OS=Rattus norvegicus GN=Tcea2 PE=2 SV=1 gi\|712842 - gi\|712842\|dbj\|BAA02310.1\| transcription elongation factor S-II [Rattus sp.]	349.0	[0..1]	[299..1]
gi\|109091280 - gi\|109091280\|ref\|XP_001082344.1\| PREDICTED: transcription elongation factor A protein 2 isoform 1 [M...	349.0	[0..1]	[297..2]
TCEA2_BOVIN - Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2 PE=2 SV=1	343.0	[0..1]	[299..2]
gi\|73999378 - gi\|73999378\|ref\|XP_535071.2\| PREDICTED: similar to transcription elongation factor A (SII) 1 [Canis ...	342.0	[0..2]	[299..141]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKEEEIARI ARRLDKMVTR KNAEGAMDLL RELKNMPITL HLLQSTRVGM SVNALRKQSS  60
   61 DEELIALAKS LIKSWKKLLD VSDGKSRNQG RGTPLPTSSS KDASRTTDLS CKKPDPPRTP 120
  121 STPRITTFPQ VPITCDAVRN KCREMLTLAL QTDHDHVAVG VNCEHLSSQI EECIFLDVGN 180
  181 TDMKYKNRVR SRISNLKDAK NPGLRRNVLC GAITPQQIAV MTSEEMASDE LKEIRKAMTK 240
  241 EAIREHQMAR TGGTQTDLFT CNKCRKKNCT YTQVQTRSSD EPMTTYVVCN ECGNRWKFC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	1pqvS
Description:	RNA polymerase II-TFIIS complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits