YRC Public Data Repository - Protein Structure Prediction

Protein:	TATC_ECOLI
Organism:	Escherichia coli
Length:	258 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TATC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|82778981, gi\|... - gi\|82778981\|ref\|YP_405330.1\| TatABCE protein translocation system subunit [Shigella dysenteriae Sd19...	285.0	[0..1]	[258..1]
gi\|218429696, gi... - gi\|218692132\|ref\|YP_002400344.1\| twin-arginine protein translocation system subunit TatC [Escherichi... gi\|110345776, gi... - gi\|110644184\|ref\|YP_671914.1\| twin-arginine protein translocation system subunit TatC [Escherichia c... TATC_ECOL6 - Sec-independent protein translocase protein TatC OS=Escherichia coli O6 GN=tatC PE=3 SV=3 gi\|91213387, gi\|... - gi\|91213387\|ref\|YP_543373.1\| TatABCE protein translocation system subunit [Escherichia coli UTI89], ... gi\|75237627, gi\|... - gi\|75237627\|ref\|ZP_00721647.1\| COG0805: Sec-independent protein secretion pathway component TatC [Es... gi\|226903044, gi... - gi\|237702873\|ref\|ZP_04533354.1\| sec-independent protein twin-arginine translocase subunit tatC [Esch... gi\|227888548, gi... - gi\|227888548\|ref\|ZP_04006353.1\| Sec-independent protein translocase TatC [Escherichia coli 83972], g... gi\|115515242, gi... - gi\|117626118\|ref\|YP_859441.1\| TatABCE protein translocation system subunit [Escherichia coli APEC O1... TATC_ECOL6 - Sec-independent protein translocase protein TatC OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700... gi\|218560921, gi... - gi\|218560921\|ref\|YP_002393834.1\| twin-arginine protein translocation system subunit TatC [Escherichi...	285.0	[0..1]	[258..1]
gi\|24054406, gi\|... - gi\|24115134\|ref\|NP_709644.1\| TatABCE protein translocation system subunit [Shigella flexneri 2a str.... gi\|30043125, gi\|... - gi\|30064865\|ref\|NP_839036.1\| TatABCE protein translocation system subunit [Shigella flexneri 2a str....	284.0	[0..1]	[258..1]
gi\|62182443, gi\|... - gi\|62182443\|ref\|YP_218860.1\| TatABCE protein translocation system subunit [Salmonella enterica subsp... gi\|56130086, gi\|... - gi\|56415829\|ref\|YP_152904.1\| twin-arginine protein translocation system subunit TatC [Salmonella ent... gi\|161617098, gi... - gi\|161617098\|ref\|YP_001591063.1\| TatABCE protein translocation system subunit [Salmonella enterica s... lcl\|NC_016856.1_... - [gene=tatC] [protein=TatABCE protein translocation system subunit] [protein_id=YP_005240240.1] [loca... gi\|197263971, gi... - gi\|197263971\|ref\|ZP_03164045.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|197364759, gi... - gi\|197364759\|ref\|YP_002144396.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|198242971, gi... - gi\|198242971\|ref\|YP_002217902.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|200387906, gi... - gi\|200387906\|ref\|ZP_03214518.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|194407643, gi... - gi\|194449339\|ref\|YP_002047985.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|194454848, gi... - gi\|194468484\|ref\|ZP_03074468.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|194736563, gi... - gi\|194736563\|ref\|YP_002116901.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|197248767, gi... - gi\|197248767\|ref\|YP_002148901.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|205336498, gi... - gi\|205336498\|gb\|EDZ23262.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|205348280, gi... - gi\|205348280\|gb\|EDZ34911.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|205340966, gi... - gi\|205340966\|gb\|EDZ27730.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|194446122, gi... - gi\|194446122\|ref\|YP_002043204.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|167553389, gi... - gi\|205322162\|gb\|EDZ10001.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|167993915, gi... - gi\|205328134\|gb\|EDZ14898.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|168233910, gi... - gi\|205332097\|gb\|EDZ18861.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|168238428, gi... - gi\|197288761\|gb\|EDY28136.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|213614464 - gi\|213614464\|ref\|ZP_03371290.1\| twin-arginine protein translocation system subunit TatC [Salmonella ... gi\|16504462, gi\|... - gi\|25312120\|pir\|\|AG0915 sec-independent protein translocase protein [imported] - Salmonella enterica... gi\|213854778 - gi\|213854778\|ref\|ZP_03383018.1\| twin-arginine protein translocation system subunit TatC [Salmonella ... gi\|214002448 - gi\|214002448\|ref\|ZP_03413183.1\| twin-arginine protein translocation system subunit TatC [Salmonella ... gi\|224585790, gi... - gi\|224585790\|ref\|YP_002639589.1\| sec-independent protein translocase protein [Salmonella enterica su... gi\|16762159 - gi\|16762159\|ref\|NP_457776.1\| TatABCE protein translocation system subunit [Salmonella enterica subsp... gi\|204320701, gi... - gi\|204930297\|ref\|ZP_03221274.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|205274247, gi... - gi\|205354466\|ref\|YP_002228267.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|6960228, gi\|1... - gi\|6960228\|gb\|AAF33418.1\| 90% identity to E. coli SEC-independent protein translocase protein (TATC)... gi\|206710978, gi... - gi\|207859175\|ref\|YP_002245826.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|29143648, gi\|... - gi\|29143648\|ref\|NP_806990.1\| TatABCE protein translocation system subunit [Salmonella enterica subsp... gi\|213583369 - gi\|213583369\|ref\|ZP_03365195.1\| twin-arginine protein translocation system subunit TatC [Salmonella ...	279.0	[0..1]	[258..1]
gi\|194549208, gi... - gi\|84317683\|ref\|ZP_00966121.1\| COG0805: Sec-independent protein secretion pathway component TatC [Ps... gi\|194555033, gi... - gi\|84323844\|ref\|ZP_00971911.1\| COG0805: Sec-independent protein secretion pathway component TatC [Ps... gi\|107104169 - gi\|107104169\|ref\|ZP_01368087.1\| hypothetical protein PaerPA_01005242 [Pseudomonas aeruginosa PACS2] gi\|218894169, gi... - gi\|218894169\|ref\|YP_002443038.1\| transport protein TatC [Pseudomonas aeruginosa LESB58], gi\|21877439... gi\|32044444, gi\|... - gi\|32044444\|ref\|ZP_00141545.1\| COG0805: Sec-independent protein secretion pathway component TatC [Ps...	274.0	[0..4]	[257..12]
gi\|152988364, gi... - gi\|94415440\|ref\|ZP_01295281.1\| hypothetical protein PaerP_01002808 [Pseudomonas aeruginosa PA7], gi\|...	273.0	[0..4]	[257..12]
gi\|9951363, gi\|1... - gi\|9951363\|gb\|AAG08455.1\|AE004920_5 transport protein TatC [Pseudomonas aeruginosa PAO1], gi\|1560026... gi\|11352718 - pir\|\|A83012 transport protein TatC PA5070 [imported] - Pseudomonas aeruginosa (strain PAO1)	273.0	[0..4]	[257..12]
gi\|66043649, gi\|... - gi\|66043649\|ref\|YP_233490.1\| Sec-independent periplasmic protein translocase [Pseudomonas syringae p...	272.0	[0..3]	[255..8]
gi\|71558730, gi\|... - gi\|71738177\|ref\|YP_272668.1\| Sec-independent protein translocase TatC [Pseudomonas syringae pv. phas...	272.0	[0..3]	[255..8]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEDTQPLI THLIELRKRL LNCIIAVIVI FLCLVYFAND IYHLVSAPLI KQLPQGSTMI  60
   61 ATDVASPFFT PIKLTFMVSL ILSAPVILYQ VWAFIAPALY KHERRLVVPL LVSSSLLFYI 120
  121 GMAFAYFVVF PLAFGFLANT APEGVQVSTD IASYLSFVMA LFMAFGVSFE VPVAIVLLCW 180
  181 M

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [182-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GITSPEDLRK KRPYVLVGAF VVGMLLTPPD VFSQTLLAIP MYCLFEIGVF FSRFYVGKGR  60
   61 NREEENDAEA ESEKTEE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits