YRC Public Data Repository - Protein Structure Prediction

Protein:	T2AG_PAROL
Organism:	Paralichthys olivaceus
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for T2AG_PAROL.

Description	E-value	Query Range	Subject Range
gi\|74224980 - gi\|74224980\|dbj\|BAE38203.1\| unnamed protein product [Mus musculus]	179.0	[0..1]	[106..1]
gi\|209730768, gi... - gi\|209736464\|gb\|ACI69101.1\| Transcription initiation factor IIA subunit 2 [Salmo salar], gi\|20973076... T2AG_ONCMY - Transcription initiation factor IIA subunit 2 OS=Oncorhynchus mykiss GN=gtf2a2 PE=3 SV=1	177.0	[0..1]	[108..1]
gi\|125821526, gi... - gi\|66472540\|ref\|NP_001018441.1\| general transcription factor IIA, 2 [Danio rerio], gi\|63101237\|gb\|AA...	174.0	[0..1]	[106..1]
gi\|57108247 - gi\|57108247\|ref\|XP_535502.1\| PREDICTED: similar to general transcription factor Iia 2 isoform 1 [Can... CCDS10173.1_1 - null tr\|M3WHV3\|M3WHV3... - Transcription initiation factor IIA subunit 2 OS=Felis catus GN=GTF2A2 PE=3 SV=1 T2AG_MOUSE - Transcription initiation factor IIA subunit 2 OS=Mus musculus GN=Gtf2a2 PE=1 SV=2 T2AG_RAT - Transcription initiation factor IIA subunit 2 OS=Rattus norvegicus GN=Gtf2a2 PE=3 SV=1 gi\|109081344, gi... - gi\|109081344\|ref\|XP_001100320.1\| PREDICTED: similar to general transcription factor Iia 2 isoform 3 ... gi\|149691901 - gi\|149691901\|ref\|XP_001500046.1\| PREDICTED: similar to TFIIA small subunit [Equus caballus]	174.0	[0..1]	[106..1]
gi\|49900038, gi\|... - gi\|52346124\|ref\|NP_001005107.1\| MGC89923 protein [Xenopus (Silurana) tropicalis], gi\|49900038\|gb\|AAH... gi\|148226765, gi... - gi\|57033116\|gb\|AAH88977.1\| TFIIAg protein [Xenopus laevis], gi\|49118757\|gb\|AAH72888.1\| TFIIAg protei...	174.0	[0..1]	[106..1]
GTF2A2 - general transcription factor IIA, 2, 12kDa gi\|114657364, gi... - gi\|55642219\|ref\|XP_510452.1\| PREDICTED: general transcription factor IIA, 2, 12kDa isoform 4 [Pan tr... gi\|83035115, gi\|... - gi\|83035115\|ref\|NP_001032708.1\| general transcription factor IIA, 2, 12kDa [Bos taurus], gi\|81674371... gi\|123980684, gi... - gi\|60656075\|gb\|AAX32601.1\| general transcription factor IIA 2 [synthetic construct], gi\|208966358\|db...	174.0	[0..1]	[106..1]
gi\|55240747, gi\|... - gi\|58385021\|ref\|XP_313653.2\| ENSANGP00000013128 [Anopheles gambiae str. PEST], gi\|55240747\|gb\|EAA092...	172.0	[0..1]	[111..1]
gi\|108882476, gi... - gi\|157167549\|ref\|XP_001654851.1\| transcription initiation factor IIA (TFIIA), gamma chain [Aedes aeg...	171.0	[0..1]	[111..1]
gi\|66504876 - gi\|66504876\|ref\|XP_623063.1\| PREDICTED: similar to Transcription initiation factor IIA gamma chain (...	169.0	[0..1]	[102..1]

Back

Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYQLYRNTT LGNSLQESLD ELIQTQQITP QLALQVLLQF DKAINTALAS RVRNRVNFRG  60
   61 SLNTYRFCDN VWTFVLNDVE FREVTDLVKV DKVKIVACDG KSESTQNKSD K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.221849
Match:	1nvpD
Description:	HUMAN TFIIA/TBP/DNA COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits