YRC Public Data Repository - Protein Structure Prediction

Protein:	SYB_TETCF
Organism:	Torpedo californica
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYB_TETCF.

Description	E-value	Query Range	Subject Range
gi\|215686799, gi... - gi\|78707797\|gb\|ABB46772.1\| Synaptobrevin, putative [Oryza sativa (japonica cultivar-group)], gi\|2226...	129.0	[0..3]	[118..99]
VA714_ARATH - Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=1 SV=1	125.0	[0..4]	[118..95]
gi\|220949222 - gi\|220949222\|gb\|ACL87154.1\| CG1599-PA [synthetic construct] FBpp0308498, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG1599 (CG1599, FBgn0033452). It is a protein...	119.0	[0..4]	[117..93]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPPSGPAP DAQGGAPGQP TGPPGAPPNT TSNRRLQQTQ AQVEEVVDII RVNVDKVLER  60
   61 DQKLSELDDR ADALQAGASQ FESSAAKLKR KYWWKNCKMM IMLGGIGAII VIVIIIYFFT 120
  121

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Detection Method:	PSI-BLAST
Confidence:	19.154902
Match:	1sfcA
Description:	Synaptobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits