| Protein: | SYP42_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 323 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYP42_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
194.0 | [0..1] | [299..1] |
|
Region A: Residues: [1-323] |
1 11 21 31 41 51
| | | | | |
1 MATRNRTTVY RKHRDACKSA RAPLSLSASD SFGGPVIEMV SGSFSRSNHS SYAPLNSYDP 60
61 GPSSSDAFTI GMPPAWVDDS EEITFNIQKV RDKMNELAKA HSKALMPTFG DNKGIHREVE 120
121 MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR 180
181 LQQQKEGQDE VDLEFNVNGK MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV 240
241 LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK 300
301 CATILLVLCL IMIVLLILKN ILF
|
| Detection Method: |  |
| Confidence: | 31.0 |
| Match: | 1dn1B |
| Description: | Syntaxin 1A N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNAP receptor activity | 3.50393203740159 | bayes_pls_golite062009 |
| binding | 2.90318399946307 | bayes_pls_golite062009 |
| SNARE binding | 2.24965480325017 | bayes_pls_golite062009 |
| transporter activity | 1.74189664015129 | bayes_pls_golite062009 |
| protein binding | 1.51700626946713 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 1.49085442233849 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.13101548288086 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.643064875848901 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.370484918396857 | bayes_pls_golite062009 |
| protein transporter activity | 0.14240382084743 | bayes_pls_golite062009 |
| phospholipid binding | 0.0172309833091902 | bayes_pls_golite062009 |
