YRC Public Data Repository - Protein Structure Prediction

Protein:	CCL2_CAVPO
Organism:	Cavia porcellus
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCL2_CAVPO.

Description	E-value	Query Range	Subject Range
CCL2_RABIT - C-C motif chemokine 2 OS=Oryctolagus cuniculus GN=CCL2 PE=2 SV=1	107.0	[0..1]	[111..1]
gi\|55531 - gi\|55531\|emb\|CAA34901.1\| JE product [Rattus sp.] CCL2_RAT - C-C motif chemokine 2 OS=Rattus norvegicus GN=Ccl2 PE=2 SV=1	107.0	[0..1]	[119..1]
gi\|6531363 - gi\|6531363\|gb\|AAF15379.1\|AF065929_1 small inducible cytokine A2 precursor [Mus musculus]	105.0	[0..1]	[119..1]
gi\|28894125 - gi\|28894125\|gb\|AAO52735.1\| monocyte chemoattractant protein-3 [Macaca nemestrina]	104.0	[0..2]	[96..12]
CCL4_MACMU - C-C motif chemokine 4 OS=Macaca mulatta GN=CCL4 PE=2 SV=1	104.0	[0..1]	[91..1]
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	104.0	[0..1]	[92..1]
gi\|631586 - gi\|631586\|pir\|\|JC2336 monocyte chemoattractant protein-1 - bovine CCL2_BOVIN - C-C motif chemokine 2 OS=Bos taurus GN=CCL2 PE=3 SV=1	103.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRSSVLLCL LVIEATFCSL LMAQPDGVNT PTCCYTFNKQ IPLKRVKGYE RITSSRCPQE  60
   61 AVIFRTLKNK EVCADPTQKW VQDYIAKLDQ RTQQKQNSTA PQTSKPLNIR FTTQDPKNRS 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.045757
Match:	1bo0A
Description:	MONOCYTE CHEMOATTRACTANT PROTEIN-3, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits