YRC Public Data Repository - Protein Structure Prediction

Protein:	SUFA_ECOLI
Organism:	Escherichia coli
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUFA_ECOLI.

Description	E-value	Query Range	Subject Range
ERPA_BORA1 - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella avium (strain 197N) GN=erpA PE=3 S...	161.0	[0..1]	[122..1]
gi\|126208405, gi... - gi\|126208405\|ref\|YP_001053630.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae L20], gi... gi\|190150256, gi... - gi\|190150256\|ref\|YP_001968781.1\| iron-binding protein IscA [Actinobacillus pleuropneumoniae serovar ... gi\|165976348, gi... - gi\|165976348\|ref\|YP_001651941.1\| iron-binding protein [Actinobacillus pleuropneumoniae serovar 3 str... gi\|32034039 - gi\|32034039\|ref\|ZP_00134283.1\| COG0316: Uncharacterized conserved protein [Actinobacillus pleuropneu...	161.0	[0..16]	[122..1]
gi\|111611416, gi... - gi\|111611416\|ref\|ZP_01398505.1\| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2], ...	160.0	[0..3]	[121..77]
gi\|37197683, gi\|... - gi\|37678941\|ref\|NP_933550.1\| hypothetical protein VV0757 [Vibrio vulnificus YJ016], gi\|37197683\|dbj\|...	160.0	[0..16]	[122..1]
gi\|41725506, gi\|... - gi\|71907581\|ref\|YP_285168.1\| HesB/YadR/YfhF:Iron-sulphur cluster assembly protein IscA [Dechloromona...	160.0	[0..16]	[122..1]
ERPA_BORPA - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella parapertussis GN=erpA PE=3 SV=1 ERPA_BORPA - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella parapertussis (strain 12822 / ATCC... ERPA_BORPE - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella pertussis GN=erpA PE=3 SV=1 ERPA_BORBR - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella bronchiseptica (strain ATCC BAA-58... ERPA_BORBR - Putative iron-sulfur cluster insertion protein erpA OS=Bordetella bronchiseptica GN=erpA PE=3 SV=1 ERPA_BORPE - Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella pertussis (strain Tohama I / ATCC ...	159.0	[0..1]	[122..1]
gi\|86145585, gi\|... - gi\|86145585\|ref\|ZP_01063915.1\| HesB family protein [Vibrio sp. MED222], gi\|85836556\|gb\|EAQ54682.1\| H... gi\|218321650, gi... - gi\|218708631\|ref\|YP_002416252.1\| HesB family protein [Vibrio splendidus LGP32], gi\|218321650\|emb\|CAV... gi\|84377461, gi\|... - gi\|84387616\|ref\|ZP_00990633.1\| HesB family protein [Vibrio splendidus 12B01], gi\|84377461\|gb\|EAP9432...	158.0	[0..16]	[122..1]
gi\|75857374, gi\|... - gi\|75857374\|ref\|ZP_00764990.1\| COG0316: Uncharacterized conserved protein [Vibrio sp. Ex25], gi\|1161...	158.0	[0..16]	[122..1]
gi\|33148430, gi\|... - gi\|33152208\|ref\|NP_873561.1\| hesB family protein [Haemophilus ducreyi 35000HP], gi\|33148430\|gb\|AAP95...	158.0	[0..16]	[122..1]
gi\|120611116, gi... - gi\|120611116\|ref\|YP_970794.1\| iron-sulfur cluster assembly protein IscA [Acidovorax avenae subsp. ci...	158.0	[0..16]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMHSGTFNP QDFAWQGLTL TPAAAIHIRE LVAKQPGMVG VRLGVKQTGC AGFGYVLDSV  60
   61 SEPDKDDLLF EHDGAKLFVP LQAMPFIDGT EVDFVREGLN QIFKFHNPKA QNECGCGESF 120
  121 GV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	2d2aA
Description:	Crystal Structure of Escherichia coli SufA Involved in Biosynthesis of Iron-sulfur Clusters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits