YRC Public Data Repository - Protein Structure Prediction

Protein:	STP2_MACFA
Organism:	Macaca fascicularis
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STP2_MACFA.

Description	E-value	Query Range	Subject Range
gi\|109127617 - gi\|109127617\|ref\|XP_001106917.1\| PREDICTED: similar to Nuclear transition protein 2 (TP-2) (TP2) [Ma...	165.0	[0..1]	[141..52]
gi\|18149003 - gi\|18149003\|dbj\|BAB83536.1\| transition protein 2 [Macaca fascicularis]	147.0	[0..1]	[141..29]
gi\|110055, gi\|54874 - gi\|54874\|emb\|CAA34914.1\| unknown protein [Mus musculus], pir\|\|S14529 transition protein 2 - mouse	140.0	[0..1]	[140..403]
STP2_PONPY - Nuclear transition protein 2 (Fragment) OS=Pongo pygmaeus GN=TNP2 PE=2 SV=1	135.0	[0..1]	[136..1]
gi\|193073246, gi... - gi\|193073246\|tpg\|DAA06279.1\| TPA_inf: transition protein 2 [Pan troglodytes], gi\|114660997\|ref\|XP_00...	134.0	[0..1]	[141..1]
STP2_PANPA - Nuclear transition protein 2 (Fragment) OS=Pan paniscus GN=TNP2 PE=2 SV=1	117.0	[0..1]	[137..1]
TNP2 - transition protein 2 (during histone to protamine replacement)	113.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTKTHSLPI THTQLHSNSR PQSRSQCTCT HHCQTFSQSC RQSQRGSRSR SSSQSPATHQ  60
   61 NPTGAHSSSG CQSQSPNASP PPKRHKKTMN SHHSPTRPTI LHSSCPKNRK NLEGKLNKKK 120
  121 MAKRIQQVYK TKKRSSGRKS N

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	95.481486
Match:	PF01254.9
Description:	No description for PF01254.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits