YRC Public Data Repository - Protein Structure Prediction

Protein:	STP2_CANLF
Organism:	Canis lupus familiaris
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STP2_CANLF.

Description	E-value	Query Range	Subject Range
gi\|110055, gi\|54874 - gi\|54874\|emb\|CAA34914.1\| unknown protein [Mus musculus], pir\|\|S14529 transition protein 2 - mouse	150.0	[0..1]	[129..403]
gi\|109127617 - gi\|109127617\|ref\|XP_001106917.1\| PREDICTED: similar to Nuclear transition protein 2 (TP-2) (TP2) [Ma...	143.0	[0..1]	[129..52]
gi\|18149003 - gi\|18149003\|dbj\|BAB83536.1\| transition protein 2 [Macaca fascicularis]	125.0	[0..1]	[129..29]
STP2_PONPY - Nuclear transition protein 2 (Fragment) OS=Pongo pygmaeus GN=TNP2 PE=2 SV=1	120.0	[0..1]	[126..1]
STP2_BOVIN - Nuclear transition protein 2 OS=Bos taurus GN=TNP2 PE=2 SV=2	116.0	[0..1]	[129..1]
gi\|193073246, gi... - gi\|193073246\|tpg\|DAA06279.1\| TPA_inf: transition protein 2 [Pan troglodytes], gi\|114660997\|ref\|XP_00...	115.0	[0..1]	[129..1]
gi\|2144754 - pir\|\|BGPG2 spermatid transition protein 2 - pig STP2_PIG - Nuclear transition protein 2 OS=Sus scrofa GN=TNP2 PE=2 SV=1	113.0	[0..1]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTKTQSLPI THTQPHSNSR PQGHTCSQCT CSSHCQTCSQ SCSQSRSSSQ SPTGHHSSSG  60
   61 HQSQSPHPTL PPRHQKHTRH SHHCPPRPTT HSCSYPKNRK NFEGKVNKRK VVKRSQQVYK 120
  121 TKRRNSGRK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.920819
Match:	PF01254.9
Description:	No description for PF01254.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits