YRC Public Data Repository - Protein Structure Prediction

Protein:	STMN2_MOUSE
Organism:	Mus musculus
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STMN2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|50745196 - gi\|50745196\|ref\|XP_420017.1\| PREDICTED: similar to Stathmin 4 (Stathmin-like protein B3) (RB3) [Gall...	271.0	[0..2]	[178..104]
gi\|73992751 - gi\|73992751\|ref\|XP_534480.2\| PREDICTED: similar to Stathmin 3 (SCG10-like protein) (SCG10-related pr...	259.0	[0..3]	[179..107]
gi\|12850126 - gi\|12850126\|dbj\|BAB28602.1\| unnamed protein product [Mus musculus]	235.0	[0..1]	[161..1]
STMN2_RAT - Stathmin-2 OS=Rattus norvegicus GN=Stmn2 PE=1 SV=2	228.0	[0..1]	[179..1]
gi\|2605600 - gi\|2605600\|dbj\|BAA23326.1\| silencer element [Homo sapiens]	227.0	[0..1]	[179..1]
gi\|148224128, gi... - gi\|27371120\|gb\|AAH41517.1\| Stmn3-prov protein [Xenopus laevis], gi\|148224128\|ref\|NP_001080212.1\| sta...	227.0	[0..1]	[179..1]

Back

Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTAMAYKE KMKELSMLSL ICSCFYPEPR NINIYTYDDM EVKQINKRAS GQAFELILKP  60
   61 PSPISEAPRT LASPKKKDLS LEEIQKKLEA AEERRKSQEA QVLKQLAEKR EHEREVLQKA 120
  121 LEENNNFSKM AEEKLILKME QIKENREANL AAIIERLQEK ERHAAEVRRN KELQVELSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.045757
Match:	1sa1E
Description:	TUBULIN-PODOPHYLLOTOXIN: STATHMIN-LIKE DOMAIN COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
tubulin binding	6.62779017447975	bayes_pls_golite062009
microtubule binding	5.64548039780746	bayes_pls_golite062009
cytoskeletal protein binding	5.28582290763985	bayes_pls_golite062009
protein binding	2.51615225301602	bayes_pls_golite062009
binding	2.22547233326175	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: