YRC Public Data Repository - Protein Structure Prediction

Protein:	SRTD1_MOUSE
Organism:	Mus musculus
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRTD1_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|149056522, gi... - gi\|56090255\|ref\|NP_001007736.1\| SERTA domain containing 1 [Rattus norvegicus], gi\|38197400\|gb\|AAH618...	342.0	[0..1]	[236..1]
gi\|12842405 - gi\|12842405\|dbj\|BAB25588.1\| unnamed protein product [Mus musculus]	336.0	[0..1]	[236..1]
gi\|109124803 - gi\|109124803\|ref\|XP_001096320.1\| PREDICTED: SERTA domain containing 1 [Macaca mulatta]	258.0	[0..1]	[236..1]
SERTAD1 - SERTA domain containing 1 gi\|60655729, gi\|... - gi\|60655729\|gb\|AAX32428.1\| SERTA domain containing 1 [synthetic construct], gi\|208968757\|dbj\|BAG7421...	250.0	[0..1]	[236..1]
gi\|60652637 - gi\|60652637\|gb\|AAX29013.1\| SERTA domain containing 1 [synthetic construct]	250.0	[0..1]	[236..1]
gi\|73587222, gi\|... - gi\|94966919\|ref\|NP_001035654.1\| SERTA domain containing 1 [Bos taurus], gi\|73587222\|gb\|AAI03441.1\| S...	250.0	[0..1]	[236..1]
gi\|114677315 - gi\|114677315\|ref\|XP_512664.2\| PREDICTED: SERTA domain containing 1 [Pan troglodytes]	243.0	[0..1]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKGLKRKR EEEETMEALS VDSCWLDPSH PAVAQTPPTV ASSSLFDLSV VKLHHSLRQS  60
   61 EPDLRHLVLV VNTLRRIQAS MEPAPVLPPE PIQPPAPSVA DSLLASSDAG LSASMASLLE 120
  121 DLNHIEDLNQ APQP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QADEGPPGRS IGGISPNLGA LDLLGPATGC LLDDGLEGLF EDIDTSMYDS ELWLPASEGL  60
   61 KPGPENGPAK EEPPELDEAE LDYLMDVLVG TQALERPPGP GR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits