YRC Public Data Repository - Protein Structure Prediction

Protein:	SSPF_BACME
Organism:	Bacillus megaterium
Length:	56 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSPF_BACME.

Description	E-value	Query Range	Subject Range
gi\|20808898, gi\|... - gi\|20808898\|ref\|NP_624069.1\| small, acid-soluble spore proteins, alpha/be [Thermoanaerobacter tengco... gi\|20808898 - gi\|20808898\|ref\|NP_624069.1\| Small, acid-soluble spore proteins, alpha/be [Thermoanaerobacter tengco... gi\|214034736, gi... - gi\|254479316\|ref\|ZP_05092655.1\| hypothetical protein CDSM653_1671 [Carboxydibrachium pacificum DSM 1...	92.0	[0..1]	[56..1]
gi\|242258165, gi... - gi\|242258165\|ref\|ZP_04802994.1\| conserved hypothetical protein [Thermoanaerobacter sp. X513], gi\|242... gi\|241903622, gi... - gi\|241903622\|ref\|ZP_04788343.1\| conserved hypothetical protein [Thermoanaerobacter brockii subsp. fi... gi\|166853508, gi... - gi\|167039268\|ref\|YP_001662253.1\| hypothetical protein Teth514_0609 [Thermoanaerobacter sp. X514], gi... gi\|76588449, gi\|... - gi\|76796179\|ref\|ZP_00778546.1\| Small acid-soluble spore protein, alpha/beta type [Thermoanaerobacter...	90.0	[0..1]	[54..1]
gi\|221312176 - gi\|221312176\|ref\|ZP_03593981.1\| small acid-soluble spore protein (alpha/beta-type SASP) [Bacillus su... gi\|221317109 - gi\|221317109\|ref\|ZP_03598403.1\| small acid-soluble spore protein (alpha/beta-type SASP) [Bacillus su... SSPF_BACSU - Protein sspF OS=Bacillus subtilis GN=sspF PE=3 SV=1 gi\|221321372 - gi\|221321372\|ref\|ZP_03602666.1\| small acid-soluble spore protein (alpha/beta-type SASP) [Bacillus su... SSPF_BACSU - Protein SspF OS=Bacillus subtilis (strain 168) GN=sspF PE=3 SV=1	89.0	[0..1]	[56..1]
gi\|25494714 - pir\|\|D83657 small acid-soluble spore protein (minor alpha/beta-type SASP) sspF [imported] - Bacillus... gi\|15612623, gi\|... - gi\|15612623\|ref\|NP_240926.1\| small acid-soluble spore protein (minor alpha/beta-type SASP) [Bacillus...	87.0	[0..1]	[56..1]
gi\|56908089, gi\|... - gi\|56961855\|ref\|YP_173577.1\| small acid-soluble spore protein [Bacillus clausii KSM-K16], gi\|5690808...	87.0	[0..1]	[55..1]
gi\|52783902, gi\|... - gi\|52783902\|ref\|YP_089731.1\| SspF [Bacillus licheniformis ATCC 14580], gi\|52346404\|gb\|AAU39038.1\| Ss...	86.0	[0..1]	[56..1]
gi\|83589658, gi\|... - gi\|83589658\|ref\|YP_429667.1\| small acid-soluble spore protein alpha/beta family protein [Moorella th...	85.0	[0..1]	[54..3]
gi\|109645653, gi... - gi\|68207391\|ref\|ZP_00559554.1\| Small acid-soluble spore protein, alpha/beta type [Desulfitobacterium...	85.0	[0..1]	[55..24]
gi\|219669741, gi... - gi\|219669741\|ref\|YP_002460176.1\| small acid-soluble spore protein (minor alpha/beta-type SASP) [Desu... gi\|89334755, gi\|... - gi\|89895307\|ref\|YP_518794.1\| hypothetical protein DSY2561 [Desulfitobacterium hafniense Y51], gi\|893...	83.0	[0..1]	[55..1]
gi\|50082968, gi\|... - gi\|50196906\|ref\|YP_016646.2\| small, acid-soluble spore protein [Bacillus anthracis str. 'Ames Ancest... gi\|218535063, gi... - gi\|218901245\|ref\|YP_002449079.1\| small, acid-soluble spore protein [Bacillus cereus AH820], gi\|21853... gi\|42779123, gi\|... - gi\|42779123\|ref\|NP_976370.1\| small, acid-soluble spore protein [Bacillus cereus ATCC 10987], gi\|4273... gi\|222093814, gi... - gi\|222093814\|ref\|YP_002527863.1\| small, acid-soluble spore protein [Bacillus cereus Q1], gi\|22123786... gi\|30253555, gi\|... - gi\|30260234\|ref\|NP_842611.1\| small, acid-soluble spore protein [Bacillus anthracis str. Ames], gi\|30... gi\|196047367, gi... - gi\|196047367\|ref\|ZP_03114580.1\| small, acid-soluble spore protein [Bacillus cereus 03BB108], gi\|1960... gi\|21398007 - ref\|NP_653992.1\| SASP, Small, acid-soluble spore proteins, alpha/beta type [Bacillus anthracis str. ... gi\|217065320, gi... - gi\|217957620\|ref\|YP_002336162.1\| small, acid-soluble spore protein [Bacillus cereus AH187], gi\|21706... gi\|196036367, gi... - gi\|196036367\|ref\|ZP_03103764.1\| small, acid-soluble spore protein [Bacillus cereus W], gi\|195990997\|... gi\|227812717, gi... - gi\|227812717\|ref\|YP_002812726.1\| small, acid-soluble spore protein [Bacillus anthracis str. CDC 684]... gi\|196027384, gi... - gi\|196041764\|ref\|ZP_03109054.1\| small, acid-soluble spore protein [Bacillus cereus NVH0597-99], gi\|1... gi\|229603962, gi... - gi\|229603962\|ref\|YP_002864695.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0248], ... gi\|172080179, gi... - gi\|177655338\|ref\|ZP_02936867.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0174], g... gi\|49177005, gi\|... - gi\|49183078\|ref\|YP_026330.1\| small, acid-soluble spore protein [Bacillus anthracis str. Sterne], gi\|... gi\|190559874, gi... - gi\|190568950\|ref\|ZP_03021851.1\| small, acid-soluble spore protein [Bacillus anthracis Tsiankovskii-I... gi\|225862096, gi... - gi\|225862096\|ref\|YP_002747474.1\| small, acid-soluble spore protein [Bacillus cereus 03BB102], gi\|225... gi\|170667106, gi... - gi\|170688882\|ref\|ZP_02880084.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0465], g... gi\|254733605, gi... - gi\|254733605\|ref\|ZP_05191324.1\| small, acid-soluble spore protein [Bacillus anthracis str. Western N... gi\|170707596, gi... - gi\|170707596\|ref\|ZP_02898049.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0389], g... gi\|254744652 - gi\|254744652\|ref\|ZP_05202331.1\| small, acid-soluble spore protein [Bacillus anthracis str. Kruger B] gi\|167529593, gi... - gi\|167635119\|ref\|ZP_02393436.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0442], g... gi\|254682329 - gi\|254682329\|ref\|ZP_05146190.1\| small, acid-soluble spore protein [Bacillus anthracis str. CNEVA-906... gi\|167510521, gi... - gi\|167641536\|ref\|ZP_02399784.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0193], g... gi\|254724185 - gi\|254724185\|ref\|ZP_05185970.1\| small, acid-soluble spore protein [Bacillus anthracis str. A1055] gi\|164711701, gi... - gi\|165872573\|ref\|ZP_02217205.1\| small, acid-soluble spore protein [Bacillus anthracis str. A0488], g... gi\|254756357 - gi\|254756357\|ref\|ZP_05208386.1\| small, acid-soluble spore protein [Bacillus anthracis str. Vollum] gi\|254762413 - gi\|254762413\|ref\|ZP_05214255.1\| small, acid-soluble spore protein [Bacillus anthracis str. Australia...	82.0	[0..1]	[56..1]

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Predicted Domain #1

Region A:
Residues: [1-56]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRRGIMSS KLKEELAKEL GFYDTVQAEG WGAIRAKDAG NMVKRAVELA QQQLKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits