YRC Public Data Repository - Protein Structure Prediction

Protein:	SSPB_ECOLI
Organism:	Escherichia coli
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSPB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238789740, gi... - gi\|77973391\|ref\|ZP_00828939.1\| COG2969: Stringent starvation protein B [Yersinia frederiksenii ATCC ...	224.0	[0..1]	[165..1]
gi\|77977068, gi\|... - gi\|77977068\|ref\|ZP_00832528.1\| COG2969: Stringent starvation protein B [Yersinia intermedia ATCC 299...	221.0	[0..1]	[165..1]
gi\|77963496, gi\|... - gi\|77963496\|ref\|ZP_00827305.1\| COG2969: Stringent starvation protein B [Yersinia mollaretii ATCC 439...	219.0	[0..1]	[165..1]
gi\|218560290, gi... - gi\|218560290\|ref\|YP_002393203.1\| ClpXP protease specificity-enhancing factor [Escherichia coli S88],... gi\|218429074, gi... - gi\|218691510\|ref\|YP_002399722.1\| ClpXP protease specificity-enhancing factor [Escherichia coli ED1a]... gi\|26249807, gi\|... - gi\|26249807\|ref\|NP_755847.1\| ClpXP protease specificity-enhancing factor [Escherichia coli CFT073], ... gi\|191174410, gi... - gi\|75236476\|ref\|ZP_00720571.1\| COG2969: Stringent starvation protein B [Escherichia coli F11], gi\|19... gi\|110643461, gi... - gi\|110643461\|ref\|YP_671191.1\| ClpXP protease specificity-enhancing factor [Escherichia coli 536], gi... gi\|117625512, gi... - gi\|117625512\|ref\|YP_858835.1\| ClpXP protease specificity-enhancing factor [Escherichia coli APEC O1]... gi\|237706027, gi... - gi\|237706027\|ref\|ZP_04536508.1\| stringent starvation protein B [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227835338, gi... - gi\|227887942\|ref\|ZP_04005747.1\| stringent starvation protein B [Escherichia coli 83972], gi\|22783533... gi\|91074220, gi\|... - gi\|91212646\|ref\|YP_542632.1\| ClpXP protease specificity-enhancing factor [Escherichia coli UTI89], g...	216.0	[0..1]	[165..1]
gi\|186896988, gi... - gi\|186896988\|ref\|YP_001874100.1\| ClpXP protease specificity-enhancing factor [Yersinia pseudotubercu... gi\|25308360 - pir\|\|AI0432 probable stringent starvation protein B sspB [imported] - Yersinia pestis (strain CO92) gi\|45438414, gi\|... - gi\|45443545\|ref\|NP_995084.1\| ClpXP protease specificity-enhancing factor [Yersinia pestis biovar Mic... gi\|22124051, gi\|... - gi\|22124051\|ref\|NP_667474.1\| ClpXP protease specificity-enhancing factor [Yersinia pestis KIM], gi\|2... gi\|165928136, gi... - gi\|165928136\|ref\|ZP_02223968.1\| stringent starvation protein B [Yersinia pestis biovar Orientalis st... gi\|16123704, gi\|... - gi\|218930572\|ref\|YP_002348447.1\| ClpXP protease specificity-enhancing factor [Yersinia pestis CO92],... gi\|153997335, gi... - gi\|153997335\|ref\|ZP_02022435.1\| putative stringent starvation protein B [Yersinia pestis CA88-4125],... gi\|165989712, gi... - gi\|166011328\|ref\|ZP_02232226.1\| stringent starvation protein B [Yersinia pestis biovar Antiqua str. ... gi\|51591079, gi\|... - gi\|51597797\|ref\|YP_071988.1\| ClpXP protease specificity-enhancing factor [Yersinia pseudotuberculosi... gi\|166212232, gi... - gi\|166212232\|ref\|ZP_02238267.1\| stringent starvation protein B [Yersinia pestis biovar Antiqua str. ... gi\|167400524, gi... - gi\|167400524\|ref\|ZP_02306033.1\| stringent starvation protein B [Yersinia pestis biovar Antiqua str. ... gi\|145597653, gi... - gi\|145597653\|ref\|YP_001161729.1\| ClpXP protease specificity-enhancing factor [Yersinia pestis Pestoi... gi\|167426968, gi... - gi\|167426968\|ref\|ZP_02318721.1\| stringent starvation protein B [Yersinia pestis biovar Mediaevalis s... gi\|167469335 - gi\|167469335\|ref\|ZP_02334039.1\| ClpXP protease specificity-enhancing factor [Yersinia pestis FV-1] gi\|169749312, gi... - gi\|170022778\|ref\|YP_001719283.1\| ClpXP protease specificity-enhancing factor [Yersinia pseudotubercu... gi\|89103372 - gi\|89103372\|ref\|ZP_01175953.1\| COG2969: Stringent starvation protein B [Yersinia pestis biovar Orien... gi\|229687273, gi... - gi\|229899781\|ref\|ZP_04514922.1\| ClpXP protease specificity-enhancing factor [Yersinia pestis biovar ... gi\|108809734, gi... - gi\|108809734\|ref\|YP_653650.1\| ClpXP protease specificity-enhancing factor [Yersinia pestis Antiqua],... gi\|229839216, gi... - gi\|229839216\|ref\|ZP_04459375.1\| ClpXP protease specificity-enhancing factor [Yersinia pestis biovar ... gi\|77635693 - gi\|77635693\|ref\|ZP_00797774.1\| COG2969: Stringent starvation protein B [Yersinia pestis Angola] gi\|229678214, gi... - gi\|229904096\|ref\|ZP_04519207.1\| ClpXP protease specificity-enhancing factor [Yersinia pestis Nepal51... Q665L2\|Q665L2_YERPS - Putative stringent starvation protein B - Yersinia pseudotuberculosis gi\|229837080, gi... - gi\|229837080\|ref\|ZP_04457245.1\| ClpXP protease specificity-enhancing factor [Yersinia pestis Pestoid...	215.0	[0..1]	[165..1]
gi\|153949576, gi... - gi\|77630505\|ref\|ZP_00793091.1\| COG2969: Stringent starvation protein B [Yersinia pseudotuberculosis ...	215.0	[0..1]	[165..1]
gi\|238714004, gi... - gi\|77957460\|ref\|ZP_00821515.1\| COG2969: Stringent starvation protein B [Yersinia bercovieri ATCC 439...	214.0	[0..1]	[165..1]
gi\|89050121, gi\|... - gi\|89074185\|ref\|ZP_01160684.1\| putative stringent starvation protein B [Photobacterium sp. SKA34], g...	214.0	[0..1]	[165..1]
gi\|81242684, gi\|... - gi\|82778536\|ref\|YP_404885.1\| ClpXP protease specificity-enhancing factor [Shigella dysenteriae Sd197...	214.0	[0..1]	[165..1]
gi\|50119269, gi\|... - gi\|50119269\|ref\|YP_048436.1\| ClpXP protease specificity-enhancing factor [Pectobacterium atrosepticu...	212.0	[0..1]	[165..1]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSQLTPRR PYLLRAFYEW LLDNQLTPHL VVDVTLPGVQ VPMEYARDGQ IVLNIAPRAV  60
   61 GNLELANDEV RFNARFGGIP RQVSVPLAAV LAIYARENGA GTMFEPEAAY DEDTSIMNDE 120
  121 EASADNETVM SVIDGDKPDH DDDTHPDDEP PQPPRGGRPA LRVVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.221849
Match:	1yfnA
Description:	Versatile modes of peptide recognition by the AAA+ adaptor protein SspB- the crystal structure of a SspB-RseA complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.10198821505373	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: