YRC Public Data Repository - Protein Structure Prediction

Protein:	SRP54_MYCBO, SR5...
Organism:	Mycobacterium bovis
Length:	525 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRP54_MYCBO, SR5....

Description	E-value	Query Range	Subject Range
gi\|41409081, gi\|... - gi\|41409081\|ref\|NP_961917.1\| hypothetical protein MAP2983c [Mycobacterium avium subsp. paratuberculo...	443.0	[0..1]	[525..1]
SRP54_MYCLE, SR5... - Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1, (O33013) Signal recogn... SRP54_MYCLE - Signal recognition particle protein OS=Mycobacterium leprae (strain TN) GN=ffh PE=3 SV=1 gi\|221230331, gi... - gi\|221230331\|ref\|YP_002503747.1\| signal recognition particle protein [Mycobacterium leprae Br4923], ...	441.0	[0..1]	[524..1]
gi\|90203603, gi\|... - gi\|90203603\|ref\|ZP_01206248.1\| Signal recognition particle protein [Mycobacterium vanbaalenii PYR-1]...	430.0	[0..1]	[524..1]
gi\|89342023, gi\|... - gi\|89342023\|ref\|ZP_01194264.1\| Signal recognition particle protein [Mycobacterium flavescens PYR-GCK...	427.0	[0..1]	[524..1]
gi\|54026131, gi\|... - gi\|54026131\|ref\|YP_120373.1\| putative signal recognition particle protein [Nocardia farcinica IFM 10...	424.0	[0..1]	[524..1]
gi\|108798927, gi... - gi\|108798927\|ref\|YP_639124.1\| signal recognition particle subunit FFH/SRP54 (srp54) [Mycobacterium s... gi\|119868042, gi... - gi\|92917432\|ref\|ZP_01286045.1\| Signal recognition particle protein [Mycobacterium sp. KMS], gi\|92438... gi\|92911029, gi\|... - gi\|92911029\|ref\|ZP_01279803.1\| Signal recognition particle protein [Mycobacterium sp. JLS], gi\|92431...	419.0	[0..1]	[524..1]
gi\|23493806, gi\|... - gi\|25028521\|ref\|NP_738575.1\| putative signal recognition particle protein [Corynebacterium efficiens...	402.0	[0..1]	[524..1]
gi\|110823022, gi... - gi\|111023492\|ref\|YP_706464.1\| signal recognition particle protein [Rhodococcus jostii RHA1], gi\|1108...	401.0	[0..1]	[524..1]
gi\|62390895, gi\|... - gi\|62390895\|ref\|YP_226297.1\| Signal recognition particle GTPase [Corynebacterium glutamicum ATCC 130...	394.0	[0..1]	[524..1]
gi\|38200372 - gi\|38200372\|emb\|CAE50059.1\| signal recognition particle protein [Corynebacterium diphtheriae] gi\|38234110 - gi\|38234110\|ref\|NP_939877.1\| signal recognition particle protein [Corynebacterium diphtheriae NCTC 1...	388.0	[0..1]	[525..1]

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Predicted Domain #1

Region A:
Residues: [1-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFESLSDRLT AALQGLRGKG RLTDADIDAT TREIRLALLE ADVSLPVVRA FIHRIKERAR  60
   61 GAEVSSALNP AQQVVKIVNE ELISILGGET RELAFAKTPP TVVMLAGLQG SGKTTLAGKL 120
  121 AARLRGQGHT PLLVACDLQR PAAVNQLQVV GERAGVPVFA PHPGASPESG PGDPVAVAAA 180
  181 GLAEARAKHF DVVIVDTAGR LGIDEELMAQ AAAIRDAINP DEVLFVLDAM IGQDAVTTAA 240
  241 AFGEGVGFTG VALTKLDGDA RGGAALSVRE VTGVPILFAS TGEKLEDFDV FHPDRMASRI 300
  301 LGMGDVLSLI EQAEQVFDAQ QAEEAAAKIG AGELTLEDFL EQMLAVRKMG PIGNLLGMLP 360
  361 GAAQMKDALA EVDDKQLDRV QAIIRGMTPQ ERADPKIINA SRRLRIANGS GVTVSEVNQL 420
  421 VERFFEARKM MSSMLGGMGI PGIGRKSATR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	2j289
Description:	No description for 2j289 was found.

Predicted Domain #2

Region A:
Residues: [451-525]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSKGAKGKSG KKSKKGTRGP TPPKVKSPFG VPGMPGLAGL PGGLPDLSQM PKGLDELPPG  60
   61 LADFDLSKLK FPGKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.9
Match:	1wckA
Description:	Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits