YRC Public Data Repository - Protein Structure Prediction

Protein:	SRP09_MAIZE
Organism:	Zea mays
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRP09_MAIZE.

Description	E-value	Query Range	Subject Range
gi\|149391037, gi... - gi\|218197917\|gb\|EEC80344.1\| hypothetical protein OsI_22419 [Oryza sativa Indica Group], gi\|149391037... gi\|52077269, gi\|... - gi\|52077269\|dbj\|BAD46311.1\| putative signal recognition particle 9 kDa protein [Oryza sativa Japonic...	158.0	[0..1]	[103..1]
SRP09_ARATH - Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=3 SV=1	154.0	[0..1]	[103..1]
gi\|157829621, gi... - gi\|5107800\|pdb\|1914\| Chain , Signal Recognition Particle Alu Rna Binding Heterodimer, Srp914, gi\|1...	132.0	[0..1]	[73..147]
gi\|53136754, gi\|... - gi\|53136754\|emb\|CAG32706.1\| hypothetical protein [Gallus gallus], gi\|147903950\|ref\|NP_001091005.1\| s...	128.0	[0..1]	[73..1]
gi\|62857637, gi\|... - gi\|62857637\|ref\|NP_001016786.1\| signal recognition particle 9 [Xenopus (Silurana) tropicalis], gi\|13...	128.0	[0..1]	[73..1]
gi\|41055367, gi\|... - gi\|41055367\|ref\|NP_957390.1\| signal recognition particle 9 [Danio rerio], gi\|29436534\|gb\|AAH49522.1\|...	127.0	[0..1]	[73..1]
gi\|47215826 - gi\|47215826\|emb\|CAF96789.1\| unnamed protein product [Tetraodon nigroviridis]	127.0	[0..1]	[73..1]
gi\|109499186, gi... - gi\|186910265\|ref\|NP_001119567.1\| signal recognition particle 9 [Rattus norvegicus], gi\|149040908\|gb\|...	127.0	[0..1]	[73..1]
gi\|114572895 - gi\|114572895\|ref\|XP_001137987.1\| PREDICTED: signal recognition particle 9kDa isoform 3 [Pan troglody... SRP9 - signal recognition particle 9kDa	127.0	[0..1]	[73..1]
gi\|73961487 - gi\|73961487\|ref\|XP_854739.1\| PREDICTED: similar to Signal recognition particle 9 kDa protein (SRP9) ... gi\|76637084 - gi\|76637084\|ref\|XP_605518.2\| PREDICTED: similar to Signal recognition particle 9 kDa protein (SRP9) ... tr\|M3WD00\|M3WD00... - Signal recognition particle 9 kDa protein OS=Felis catus GN=SRP9 PE=3 SV=1 gi\|149748671 - gi\|149748671\|ref\|XP_001488990.1\| PREDICTED: similar to HECT, C2 and WW domain containing E3 ubiquiti... ENSOCUP000000092... - pep:novel chromosome:oryCun2:16:47743197:47757822:1 gene:ENSOCUG00000010791 transcript:ENSOCUT000000...	127.0	[0..1]	[73..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYVDSWEEF VERSVQLFRG DPNATRYVMK YRHCEGKLVL KVTDDRECLK FKTDQAQDAK  60
   61 KMEKLNNIFF ALMTRGPDVD ISEVSGKEQA EQQQAKKGRG RRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1914A
Description:	SIGNAL RECOGNITION PARTICLE ALU RNA BINDING HETERODIMER, SRP9/14
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits