YRC Public Data Repository - Protein Structure Prediction

Protein:	SPRT_YERPE
Organism:	Yersinia pestis
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPRT_YERPE.

Description	E-value	Query Range	Subject Range
gi\|21960257, gi\|... - gi\|22127191\|ref\|NP_670614.1\| hypothetical protein y3315 [Yersinia pestis KIM], gi\|21960257\|gb\|AAM868... gi\|45438117, gi\|... - gi\|45443249\|ref\|NP_994788.1\| hypothetical protein YP_3511 [Yersinia pestis biovar Microtus str. 9100... gi\|167054292, gi... - gi\|167426689\|ref\|ZP_02318442.1\| sprT protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|166212662, gi... - gi\|166212662\|ref\|ZP_02238697.1\| sprT protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|167050796, gi... - gi\|167400088\|ref\|ZP_02305606.1\| sprT protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|162353088, gi... - gi\|162420273\|ref\|YP_001607689.1\| hypothetical protein YpAngola_A3346 [Yersinia pestis Angola], gi\|16... gi\|165990810, gi... - gi\|166010324\|ref\|ZP_02231222.1\| sprT protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659...	1.0E-58	[1..170]	[18..187]
gi\|108813288, gi... - gi\|108813288\|ref\|YP_649055.1\| hypothetical protein YPN_3128 [Yersinia pestis Nepal516], gi\|108776936... gi\|77632853 - gi\|77632853\|ref\|ZP_00795034.1\| COG3091: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108806331, gi... - gi\|108806331\|ref\|YP_650247.1\| hypothetical protein YPA_0334 [Yersinia pestis Antiqua], gi\|108778244\|... gi\|145209587, gi... - gi\|145597891\|ref\|YP_001161967.1\| hypothetical protein YPDSF_0584 [Yersinia pestis Pestoides F], gi\|1...	2.0E-58	[1..170]	[16..185]
gi\|169749625, gi... - gi\|170023091\|ref\|YP_001719596.1\| hypothetical protein YPK_0842 [Yersinia pseudotuberculosis YPIII], ... gi\|117672595, gi... - gi\|77630180\|ref\|ZP_00792766.1\| COG3091: Uncharacterized protein conserved in bacteria [Yersinia pseu...	2.0E-58	[1..170]	[18..187]
SPRT_YERPS - Protein SprT OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=sprT PE=3 SV=1 SPRT_YERPS - Protein sprT OS=Yersinia pseudotuberculosis GN=sprT PE=3 SV=1 SPRT_YERPB - Protein SprT OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=sprT PE=3 SV=1	3.0E-56	[1..170]	[1..170]
gi\|26249365, gi\|... - gi\|26249365\|ref\|NP_755405.1\| hypothetical protein c3530 [Escherichia coli CFT073], gi\|26109773\|gb\|AA...	1.0E-55	[1..165]	[19..183]
gi\|190907901, gi... - gi\|191171866\|ref\|ZP_03033412.1\| protein SprT [Escherichia coli F11], gi\|190907901\|gb\|EDV67494.1\| pro... gi\|110344685, gi... - gi\|110643093\|ref\|YP_670823.1\| hypothetical protein ECP_2938 [Escherichia coli 536], gi\|110344685\|gb\|...	1.0E-55	[1..165]	[19..183]
SPRT_ECOSE - Protein SprT OS=Escherichia coli (strain SE11) GN=sprT PE=3 SV=1 SPRT_ECO27 - Protein SprT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=sprT PE=3 SV=1 gi\|194419945, gi... - gi\|194431589\|ref\|ZP_03063880.1\| protein SprT [Shigella dysenteriae 1012], gi\|194419945\|gb\|EDX36023.1... gi\|191167921, gi... - gi\|75228898\|ref\|ZP_00715495.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... SPRT_ECO55 - Protein SprT OS=Escherichia coli (strain 55989 / EAEC) GN=sprT PE=3 SV=1 gi\|194426368, gi... - gi\|75212434\|ref\|ZP_00712458.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... SPRT_ECOK1 - Protein SprT OS=Escherichia coli O1:K1 / APEC GN=sprT PE=3 SV=1 SPRT_ECO7I - Protein SprT OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=sprT PE=3 SV=1 gi\|83587658, gi\|... - gi\|83587658\|ref\|ZP_00926285.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... SPRT_ECO45 - Protein SprT OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=sprT PE=3 SV=1 SPRT_ECO81 - Protein SprT OS=Escherichia coli O81 (strain ED1a) GN=sprT PE=3 SV=1 gi\|192930840, gi... - gi\|75258552\|ref\|ZP_00729974.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192959273, gi... - gi\|75239486\|ref\|ZP_00723457.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... SPRT_ECOUT - Protein SprT OS=Escherichia coli (strain UTI89 / UPEC) GN=sprT PE=3 SV=1 sp\|B7UHZ1\|SPRT_ECO27 - Protein sprT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=sprT PE=3 SV=1 gi\|209760118, gi... - gi\|209760124\|gb\|ACI78374.1\| hypothetical protein ECs3820 [Escherichia coli], gi\|209760118\|gb\|ACI7837... gi\|237706403, gi... - gi\|237706403\|ref\|ZP_04536884.1\| sprT [Escherichia sp. 3_2_53FAA], gi\|226899443\|gb\|EEH85702.1\| sprT [... SPRT_ECOLU - Protein SprT OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=sprT PE=3 SV=1 SPRT_ECOL6 - Protein SprT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=sprT PE=3 SV=2 SPRT_ECOL6 - Protein sprT OS=Escherichia coli O6 GN=sprT PE=3 SV=2	1.0E-54	[1..165]	[1..165]
gi\|195937082 - gi\|195937082\|ref\|ZP_03082464.1\| hypothetical protein EscherichcoliO157_11616 [Escherichia coli O157:... gi\|25304418, gi\|... - pir\|\|G85951 hypothetical protein sprT [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15803483, gi\|... - gi\|15803483\|ref\|NP_289516.1\| hypothetical protein Z4289 [Escherichia coli O157:H7 EDL933], gi\|125174... SPRT_ECO57 - Protein SprT OS=Escherichia coli O157:H7 GN=sprT PE=3 SV=1 gi\|15833074, gi\|... - gi\|15833074\|ref\|NP_311847.1\| hypothetical protein ECs3820 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254594296, gi... - gi\|254794896\|ref\|YP_003079733.1\| hypothetical protein ECSP_3915 [Escherichia coli O157:H7 str. TW143...	1.0E-54	[1..165]	[1..165]
gi\|75241260 - gi\|75241260\|ref\|ZP_00725122.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c...	2.0E-54	[1..165]	[1..165]
gi\|85675754, gi\|... - gi\|89109721\|ref\|AP_003501.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG12122 - Zn-dependent metalloprotease-related protein / Zn-dependent metalloprotease-related protein, functio... EG12122 - Zn-dependent metalloprotease-related protein / Zn-dependent metalloprotease-related protein, functio... SPRT_ECODH - Protein SprT OS=Escherichia coli (strain K12 / DH10B) GN=sprT PE=3 SV=1 SPRT_SHIBS - Protein SprT OS=Shigella boydii serotype 4 (strain Sb227) GN=sprT PE=3 SV=1 gi\|75515276, gi\|... - gi\|75515276\|ref\|ZP_00737460.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... SPRT_ECOHS - Protein SprT OS=Escherichia coli O9:H4 (strain HS) GN=sprT PE=3 SV=1 SPRT_ECOBW - Protein SprT OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=sprT PE=3 SV=1 gi\|251786197, gi... - gi\|251786197\|ref\|YP_003000501.1\| hypothetical protein B21_02737 [Escherichia coli BL21], gi\|24237847... gi\|253772218, gi... - gi\|254289614\|ref\|YP_003055362.1\| hypothetical protein ECD_02774 [Escherichia coli BL21(DE3)], gi\|253... gi\|124502260, gi... - gi\|124526156\|ref\|ZP_01698161.1\| protein of unknown function DUF335, SprT [Escherichia coli B], gi\|12... gi\|253974755, gi... - gi\|254162854\|ref\|YP_003045962.1\| hypothetical protein ECB_02774 [Escherichia coli B str. REL606], gi... SPRT_ECOLI - Protein sprT - Escherichia coli	2.0E-54	[1..165]	[1..165]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLRIPIAL QQAVMQCLRH YLQLANQHLG TAYPEPKVNY HQRGTNAGSA YLQSFEIRLN  60
   61 PVLLLENKQP FIDEVVPHEL AHLLVYRQFG RVAPHGKEWR WMMEQVLKVP ASRTHQFEVA 120
  121 SVRSKTFNYQ CKCQQHSLTI RRHNKVLRGE SEYRCRQCGE KLQFITINPD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.4
Match:	1eubA
Description:	Collagenase-3 (MMP-13)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits