YRC Public Data Repository - Protein Structure Prediction

Protein:	SPRT_ECOLI
Organism:	Escherichia coli
Length:	165 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPRT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|21960257, gi\|... - gi\|22127191\|ref\|NP_670614.1\| hypothetical protein y3315 [Yersinia pestis KIM], gi\|21960257\|gb\|AAM868... gi\|45438117, gi\|... - gi\|45443249\|ref\|NP_994788.1\| hypothetical protein YP_3511 [Yersinia pestis biovar Microtus str. 9100... gi\|167054292, gi... - gi\|167426689\|ref\|ZP_02318442.1\| sprT protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|166212662, gi... - gi\|166212662\|ref\|ZP_02238697.1\| sprT protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|167050796, gi... - gi\|167400088\|ref\|ZP_02305606.1\| sprT protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|162353088, gi... - gi\|162420273\|ref\|YP_001607689.1\| hypothetical protein YpAngola_A3346 [Yersinia pestis Angola], gi\|16... gi\|165990810, gi... - gi\|166010324\|ref\|ZP_02231222.1\| sprT protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659...	180.0	[0..1]	[162..18]
gi\|26249365, gi\|... - gi\|26249365\|ref\|NP_755405.1\| hypothetical protein c3530 [Escherichia coli CFT073], gi\|26109773\|gb\|AA...	179.0	[0..1]	[165..19]
gi\|108813288, gi... - gi\|108813288\|ref\|YP_649055.1\| hypothetical protein YPN_3128 [Yersinia pestis Nepal516], gi\|108776936... gi\|77632853 - gi\|77632853\|ref\|ZP_00795034.1\| COG3091: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|108806331, gi... - gi\|108806331\|ref\|YP_650247.1\| hypothetical protein YPA_0334 [Yersinia pestis Antiqua], gi\|108778244\|... gi\|145209587, gi... - gi\|145597891\|ref\|YP_001161967.1\| hypothetical protein YPDSF_0584 [Yersinia pestis Pestoides F], gi\|1...	179.0	[0..1]	[162..16]
gi\|190907901, gi... - gi\|191171866\|ref\|ZP_03033412.1\| protein SprT [Escherichia coli F11], gi\|190907901\|gb\|EDV67494.1\| pro... gi\|110344685, gi... - gi\|110643093\|ref\|YP_670823.1\| hypothetical protein ECP_2938 [Escherichia coli 536], gi\|110344685\|gb\|...	179.0	[0..1]	[165..19]
gi\|169749625, gi... - gi\|170023091\|ref\|YP_001719596.1\| hypothetical protein YPK_0842 [Yersinia pseudotuberculosis YPIII], ... gi\|117672595, gi... - gi\|77630180\|ref\|ZP_00792766.1\| COG3091: Uncharacterized protein conserved in bacteria [Yersinia pseu...	179.0	[0..1]	[162..18]
gi\|113950123, gi... - gi\|160873965\|ref\|YP_001553281.1\| protein of unknown function DUF335 SprT [Shewanella baltica OS195],...	179.0	[0..3]	[164..56]
gi\|115346715, gi... - gi\|218928104\|ref\|YP_002345979.1\| hypothetical protein YPO0932 [Yersinia pestis CO92], gi\|16121236\|re... gi\|149367059, gi... - gi\|149367059\|ref\|ZP_01889092.1\| hypothetical protein YPE_2337 [Yersinia pestis CA88-4125], gi\|149290... gi\|89104335 - gi\|89104335\|ref\|ZP_01176881.1\| COG3091: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|229697214, gi... - gi\|229840848\|ref\|ZP_04461007.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229690902, gi... - gi\|229842592\|ref\|ZP_04462747.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... SPRT_YERPE - Protein SprT OS=Yersinia pestis GN=sprT PE=3 SV=1	178.0	[0..1]	[162..1]
gi\|117921879, gi... - gi\|78685116\|ref\|ZP_00849896.1\| Protein of unknown function SprT [Shewanella sp. ANA-3], gi\|78507042\|...	178.0	[0..2]	[163..34]
SO0834 - sprT protein putative gi\|24346397, gi\|... - gi\|24372423\|ref\|NP_716465.1\| hypothetical protein SO_0834 [Shewanella oneidensis MR-1], gi\|24346397\|...	177.0	[0..3]	[164..44]
SPRT_SHIDS - Protein SprT OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=sprT PE=3 SV=1	176.0	[0..1]	[165..1]

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Predicted Domain #1

Region A:
Residues: [1-165]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTSRLPIAI QQAVMRRLRE KLAQANLKLG RNYPEPKLSY TQRGTSAGTA WLESYEIRLN  60
   61 PVLLLENSEA FIEEVVPHEL AHLLVWKHFG RVAPHGKEWK WMMENVLGVP ARRTHQFELQ 120
  121 SVRRNTFPYR CKCQEHQLTV RRHNRVVRGE AVYRCVHCGE QLVAK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.35
Match:	1eubA
Description:	Collagenase-3 (MMP-13)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.447783912475559	bayes_pls_golite062009
hydrolase activity	0.142586588022928	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: