YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCS2_MOUSE
Organism:	Mus musculus
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCS2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|122937506, gi... - gi\|88947627\|ref\|XP_949583.1\| PREDICTED: similar to Signal peptidase complex subunit 2 (Microsomal si...	325.0	[0..1]	[226..1]
gi\|114639385 - gi\|114639385\|ref\|XP_001174940.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	322.0	[0..1]	[226..1]
SPCS2_PONAB - Signal peptidase complex subunit 2 OS=Pongo abelii GN=SPCS2 PE=2 SV=1 SPCS2_PONPY - Signal peptidase complex subunit 2 - Pongo pygmaeus (Orangutan)	322.0	[0..1]	[226..1]
gi\|109075548 - gi\|109075548\|ref\|XP_001101980.1\| PREDICTED: similar to Signal peptidase complex subunit 2 (Microsoma...	322.0	[0..1]	[226..1]
SPCS2_CANLF - Signal peptidase complex subunit 2 OS=Canis lupus familiaris GN=SPCS2 PE=1 SV=1	318.0	[0..1]	[226..1]
gi\|50731377 - gi\|50731377\|ref\|XP_417247.1\| PREDICTED: similar to Microsomal signal peptidase 25 kDa subunit (SPase...	315.0	[0..26]	[226..123]
gi\|109462490, gi... - ref\|XP_214994.1\| similar to RIKEN cDNA 5730406I15 [Rattus norvegicus], gi\|109462490\|ref\|XP_001066421...	315.0	[0..1]	[226..1]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASASQGGR SGGGGGSSGA GGGPSCGTSS SRSGLLDKWK IDDKPVKIDK WDGSAVKNSL  60
   61 DDSAKKVLLE KYKYVENFGL IDGRLTICTI SCFFAIVALI WDYMHPFPES KPVLALCVIS 120
  121 YFVMMGILTI YTSYKEKSIF LVAHRKDPTG MDPDDIWQLS SSLKRFDDKY TLKLTFISGR 180
  181 TKQQREAEFT KSIAKFFDHS GTLVMDAYEP EISRLHDSLA TERKIK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	124.387216
Match:	PF06703.2
Description:	No description for PF06703.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits