YRC Public Data Repository - Protein Structure Prediction

Protein:	SP12_MOUSE, SPCS...
Organism:	Mus musculus
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SP12_MOUSE, SPCS....

Description	E-value	Query Range	Subject Range
gi\|109039192 - gi\|109039192\|ref\|XP_001085058.1\| PREDICTED: similar to Signal peptidase complex subunit 1 (Microsoma...	178.0	[0..1]	[102..285]
gi\|50754117 - gi\|50754117\|ref\|XP_414251.1\| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...	171.0	[0..1]	[101..100]
SPCS1_PONAB - Signal peptidase complex subunit 1 OS=Pongo abelii GN=SPCS1 PE=3 SV=1 SPCS1 - signal peptidase complex subunit 1 homolog (S. cerevisiae) ENSPTRT00000028110 - null SPCS1_PONPY - Signal peptidase complex subunit 1 - Pongo pygmaeus (Orangutan)	169.0	[0..1]	[102..1]
SPCS1_BOVIN - Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1	168.0	[0..1]	[102..1]
gi\|16975492, gi\|... - sp\|Q9D958\|SP12_MOUSE Microsomal signal peptidase 12 kDa subunit (SPase 12 kDa subunit) (SPC12), gi\|...	167.0	[0..1]	[102..1]
gi\|73985289, gi\|... - gi\|73985289\|ref\|XP_858931.1\| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...	167.0	[0..1]	[102..1]
gi\|47227252 - gi\|47227252\|emb\|CAF96801.1\| unnamed protein product [Tetraodon nigroviridis]	145.0	[0..1]	[99..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEHLSSLPT QMDYKGQKLA EQMFQGIILF SAIVGFIYGY VAEQFGWTVY IVMAGFAFSC  60
   61 LLTLPPWPIY RRHPLKWLPV QDLGTEDKKS GDRKIKRHAK NN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.408935
Match:	PF06645.4
Description:	No description for PF06645.4 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.11016593876089	bayes_pls_golite062009
catalytic activity	0.532651537146877	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: