YRC Public Data Repository - Protein Structure Prediction

Protein:	MED31_TAESO
Organism:	Taenia solium
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED31_TAESO.

Description	E-value	Query Range	Subject Range
gi\|48122204 - gi\|48122204\|ref\|XP_393244.1\| PREDICTED: similar to Mediator of RNA polymerase II transcription subun...	216.0	[0..11]	[145..16]
MED31_AEDAE - Mediator of RNA polymerase II transcription subunit 31 OS=Aedes aegypti GN=MED31 PE=3 SV=1	215.0	[0..14]	[140..6]
gi\|220944342, gi... - gi\|220954132\|gb\|ACL89609.1\| MED31-PA [synthetic construct], gi\|220944342\|gb\|ACL84714.1\| MED31-PA [sy... FBpp0293855, MED... - The gene Mediator complex subunit 31 is referred to in FlyBase by the symbol Dmel\MED31 (CG1057, FBg...	208.0	[0..15]	[129..6]
gi\|125776368, gi... - gi\|54638997\|gb\|EAL28399.1\| GA14867-PA [Drosophila pseudoobscura], gi\|125776368\|ref\|XP_001359254.1\| G...	204.0	[0..17]	[142..6]
gi\|91084217 - gi\|91084217\|ref\|XP_968682.1\| PREDICTED: similar to Mediator of RNA polymerase II transcription subun...	201.0	[0..19]	[143..11]
gi\|118777428, gi... - gi\|118777428\|ref\|XP_307924.3\| ENSANGP00000021911 [Anopheles gambiae str. PEST], gi\|116132773\|gb\|EAA0...	201.0	[0..14]	[128..6]
gi\|72040230, gi\|... - gi\|72040230\|ref\|XP_794567.1\| PREDICTED: similar to CGI-125 protein [Strongylocentrotus purpuratus], ...	198.0	[0..25]	[136..22]
MED31_BOVIN - Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1	198.0	[0..17]	[127..3]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNRPKSVLT PARLGTSGVV RNTLEDPWVR FQIELEFVQS LGNPDYLTFL AQQGCFDKPE  60
   61 FINYLSYLQY WKSPSYSRFI TYPFCLHMLD LLQSPDFRRE VAHESVTRFI DDQMLLHWKN 120
  121 YLRKRAEMVN KHVQSLDAMA TPGPGPSS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.107905
Match:	PF05669.3
Description:	No description for PF05669.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits