YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149944347, gi...
Organism:	Arabidopsis thaliana
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149944347, gi....

Description	E-value	Query Range	Subject Range
MSRB1_ARATH - Peptide methionine sulfoxide reductase B1, chloroplastic OS=Arabidopsis thaliana GN=MSRB1 PE=1 SV=1	272.0	[0..1]	[195..1]
gi\|86558601, gi\|... - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g... gi\|86610059 - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B...	223.0	[0..37]	[190..5]
gi\|60494275, gi\|... - gi\|60682841\|ref\|YP_212985.1\| bifunctional methionine sulfoxide reductase A/B protein [Bacteroides fr...	222.0	[0..22]	[195..172]
gi\|53714858, gi\|... - gi\|53714858\|ref\|YP_100850.1\| bifunctional methionine sulfoxide reductase A/B protein [Bacteroides fr...	220.0	[0..22]	[195..172]
gi\|85858102, gi\|... - gi\|85858102\|ref\|YP_460304.1\| peptide methionine sulfoxide reductase [Syntrophus aciditrophicus SB], ...	220.0	[0..21]	[194..168]
gi\|51856588, gi\|... - gi\|51892899\|ref\|YP_075590.1\| bifunctional methionine sulfoxide reductase A/B protein [Symbiobacteriu...	217.0	[0..21]	[194..139]
gi\|56460631, gi\|... - gi\|56460631\|ref\|YP_155912.1\| bifunctional methionine sulfoxide reductase A/B protein [Idiomarina loi...	217.0	[0..20]	[195..163]
gi\|29339811, gi\|... - gi\|29347909\|ref\|NP_811412.1\| bifunctional methionine sulfoxide reductase A/B protein [Bacteroides th...	216.0	[0..22]	[195..158]
gi\|115368847, gi... - gi\|115374180\|ref\|ZP_01461467.1\| peptide methionine sulfoxide reductase MsrB [Stigmatella aurantiaca ...	216.0	[0..54]	[188..49]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSTRLTII QSSFVSARTR LNYVSKTNHS GFACRSLSKP RNLSLSVYSM GSSSSSPKPD  60
   61 NVQEAEKNEF ASLSENEWKK RLTPEQYYIT RQKGTERAFT GEYWNSKTPG VYNCVCCDTP 120
  121 LFDGTGWPSY YQPIGNNVKT KLDLSIIFMP RQEVVCAVCN AHLGHVFDDG PRPTGKRYCL 180
  181 NSAALKLNAL EKTRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.154902
Match:	3cezA
Description:	No description for 3cezA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits