YRC Public Data Repository - Protein Structure Prediction

Protein:	SMS1_PROAN
Organism:	Protopterus annectens
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMS1_PROAN.

Description	E-value	Query Range	Subject Range
gi\|55233184 - gi\|55233184\|gb\|AAV48555.1\| preprosomatostatin-II [Chitala chitala]	159.0	[0..1]	[115..1]
SMS_MOUSE - Somatostatin OS=Mus musculus GN=Sst PE=3 SV=1 SMS_RAT - Somatostatin OS=Rattus norvegicus GN=Sst PE=1 SV=1	158.0	[0..1]	[115..1]
gi\|109052804 - gi\|109052804\|ref\|XP_001103516.1\| PREDICTED: similar to somatostatin preproprotein [Macaca mulatta] gi\|149731202 - gi\|149731202\|ref\|XP_001499743.1\| PREDICTED: similar to preprosomatostatin [Equus caballus] gi\|73697560, gi\|... - gi\|73697560\|gb\|AAZ81422.1\| somatostatin [Bos taurus], gi\|73586769\|gb\|AAI03254.1\| SST protein [Bos ta... SMS_SHEEP - Somatostatin OS=Ovis aries GN=SST PE=3 SV=1 SMS_PIG - Somatostatin OS=Sus scrofa GN=SST PE=1 SV=3 CCDS3288.1_1 - null gi\|55621730 - gi\|55621730\|ref\|XP_526419.1\| PREDICTED: similar to preprosomatostatin [Pan troglodytes]	156.0	[0..1]	[115..1]
HGNC:11329\|MIM:1... - null gi\|61354883, gi\|... - gi\|61354883\|gb\|AAX41072.1\| somatostatin [synthetic construct], gi\|60812789\|gb\|AAX36231.1\| somatostat... SST - somatostatin SMS_MACFA - Somatostatin OS=Macaca fascicularis GN=SST PE=3 SV=1	156.0	[0..1]	[115..1]
gi\|60824818, gi\|... - gi\|61365073\|gb\|AAX42649.1\| somatostatin [synthetic construct], gi\|60824818\|gb\|AAX36695.1\| somatostat...	155.0	[0..1]	[115..1]
SMS_BOVIN - Somatostatin OS=Bos taurus GN=SST PE=3 SV=1	155.0	[0..1]	[115..1]
SMS_CANLF - Somatostatin OS=Canis lupus familiaris GN=SST PE=3 SV=1	154.0	[0..1]	[115..1]
SMS_CHICK - Somatostatin OS=Gallus gallus GN=SST PE=3 SV=1	143.0	[0..1]	[115..1]
gi\|54145500 - gi\|54145500\|gb\|AAK97068.2\| preprosomatostatin [Pantodon buchholzi]	141.0	[0..1]	[115..1]
SMS1_PELRI - Somatostatin-1 OS=Pelophylax ridibundus GN=sst1 PE=1 SV=1	138.0	[0..1]	[115..1]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSCRFQCAL VLLSLAVVFS KVSAAPSDLR LRQLLQRSLA AAAGKQELTK YSLAELLSEL  60
   61 AQSENDALDS SDLSRGADQD EVRLELDRSA NSSPLAARER KAGCKNFFWK TFTSC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.715	a.186.1	Description not found.
View	Download	0.512	a.29.8	Description not found.
View	Download	0.502	c.37.1	P-loop containing nucleoside triphosphate hydrolases
View	Download	0.444	a.186.1	Description not found.
View	Download	0.407	a.12.1	Kix domain of CBP (creb binding protein)
View	Download	0.384	a.1.1	Globin-like
View	Download	0.384	a.1.1	Globin-like
View	Download	0.379	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits