YRC Public Data Repository - Protein Structure Prediction

Protein:	SMPA_HAEIN
Organism:	Haemophilus influenzae
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SMPA_HAEIN.

Description	E-value	Query Range	Subject Range
gi\|74276050, gi\|... - gi\|75434661\|ref\|ZP_00733238.1\| small protein A (tmRNA-binding) [Actinobacillus succinogenes 130Z], g...	162.0	[0..1]	[137..1]
gi\|148828023, gi... - gi\|148828023\|ref\|YP_001292776.1\| small protein A [Haemophilus influenzae PittGG], gi\|148719265\|gb\|AB... gi\|42630334 - gi\|42630334\|ref\|ZP_00155878.1\| COG2913: Small protein A (tmRNA-binding) [Haemophilus influenzae R284... gi\|148716675, gi... - gi\|148826515\|ref\|YP_001291268.1\| small protein A [Haemophilus influenzae PittEE], gi\|148716675\|gb\|AB... gi\|229810895, gi... - gi\|229845891\|ref\|ZP_04466003.1\| lysyl-tRNA synthetase [Haemophilus influenzae 7P49H1], gi\|229810895\|... gi\|145270126, gi... - gi\|145636600\|ref\|ZP_01792267.1\| small protein A [Haemophilus influenzae PittHH], gi\|145270126\|gb\|EDK... gi\|145634747, gi... - gi\|145634747\|ref\|ZP_01790455.1\| small protein A [Haemophilus influenzae PittAA], gi\|145267913\|gb\|EDK... gi\|144987104, gi... - gi\|145632197\|ref\|ZP_01787932.1\| lysyl-tRNA synthetase [Haemophilus influenzae 3655], gi\|144987104\|gb...	161.0	[0..1]	[137..1]
gi\|145640945, gi... - gi\|145640945\|ref\|ZP_01796527.1\| lysyl-tRNA synthetase [Haemophilus influenzae R3021], gi\|145274459\|g... gi\|145640945 - gi\|145640945\|ref\|ZP_01796527.1\| lysyl-tRNA synthetase [Haemophilus influenzae R3021] gi\|145272688, gi... - gi\|145638359\|ref\|ZP_01793969.1\| small protein A [Haemophilus influenzae PittII], gi\|145272688\|gb\|EDK... gi\|145628262, gi... - gi\|145628262\|ref\|ZP_01784063.1\| small protein A [Haemophilus influenzae 22.1-21], gi\|144980037\|gb\|ED... gi\|42631155 - gi\|42631155\|ref\|ZP_00156693.1\| COG2913: Small protein A (tmRNA-binding) [Haemophilus influenzae R286...	159.0	[0..1]	[137..1]
gi\|52308019, gi\|... - gi\|52425967\|ref\|YP_089104.1\| SmpA protein [Mannheimia succiniciproducens MBEL55E], gi\|52308019\|gb\|AA...	158.0	[0..1]	[137..1]
gi\|68249433, gi\|... - gi\|68249433\|ref\|YP_248545.1\| small protein A [Haemophilus influenzae 86-028NP], gi\|68057632\|gb\|AAX87...	158.0	[0..1]	[137..1]
gi\|1573852, gi\|1... - gi\|16272779\|ref\|NP_438998.1\| small protein A [Haemophilus influenzae Rd KW20], gi\|1573852\|gb\|AAC2249... gi\|1074525 - gi\|1074525\|pir\|\|C64014 hypothetical protein HI0838 - Haemophilus influenzae (strain Rd KW20)	158.0	[0..1]	[137..53]
gi\|168827263, gi... - gi\|46156317\|ref\|ZP_00133003.2\| COG2913: Small protein A (tmRNA-binding) [Haemophilus somnus 2336], g...	153.0	[0..1]	[137..1]
gi\|12722317, gi\|... - gi\|15603751\|ref\|NP_246825.1\| hypothetical protein PM1886 [Pasteurella multocida subsp. multocida str...	153.0	[0..1]	[137..1]
BAME_VIBF1 - Outer membrane protein assembly factor BamE OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=bamE ...	149.0	[0..1]	[115..1]
gi\|27359954, gi\|... - gi\|27363837\|ref\|NP_759365.1\| small protein A [Vibrio vulnificus CMCP6], gi\|27359954\|gb\|AAO08892.1\|AE...	149.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVKTLLGAT FLALSLASCS TVEKVVYRID VPQGNYLEAT TVAQVKEGMT AQQVQYLLGT  60
   61 PVLVDPYNSQ TWYYVFLQQR AYETPVQHTF TVKFDQRGIV TETHLDKPLP QVSQQGENNT 120
  121 IIETGEKPKS SWWKFWK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	40.187087
Match:	PF04355.4
Description:	No description for PF04355.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.678	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.663	N/A	N/A	d.17.4	NTF2-like
View	Download	0.643	N/A	N/A	d.17.4	NTF2-like
View	Download	0.610	N/A	N/A	d.17.4	NTF2-like
View	Download	0.599	N/A	N/A	d.24.1	Pili subunits
View	Download	0.588	N/A	N/A	d.17.4	NTF2-like
View	Download	0.584	N/A	N/A	d.129.3	Bet v1-like
View	Download	0.525	N/A	N/A	d.129.2	Phosphoglucomutase, C-terminal domain
View	Download	0.499	N/A	N/A	b.61.1	Avidin/streptavidin
View	Download	0.494	N/A	N/A	b.61.1	Avidin/streptavidin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits