YRC Public Data Repository - Protein Structure Prediction

Protein:	SIRA_PHOLL, TUSA...
Organism:	Photorhabdus luminescens subsp. laumondii
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SIRA_PHOLL, TUSA....

Description	E-value	Query Range	Subject Range
gi\|89104192, gi\|... - gi\|89104192\|ref\|ZP_01176742.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|145212384, gi... - gi\|145600688\|ref\|YP_001164764.1\| cell developmental protein SirA [Yersinia pestis Pestoides F], gi\|1... gi\|108810309, gi... - gi\|108810309\|ref\|YP_646076.1\| cell developmental protein SirA [Yersinia pestis Nepal516], gi\|1087739... gi\|108806199, gi... - gi\|108806199\|ref\|YP_650115.1\| cell developmental protein SirA [Yersinia pestis Antiqua], gi\|10877811... gi\|45442979, gi\|... - gi\|45442979\|ref\|NP_994518.1\| hypothetical protein YP_3227 [Yersinia pestis biovar Microtus str. 9100... gi\|21957098, gi\|... - gi\|22124324\|ref\|NP_667747.1\| hypothetical protein y0409 [Yersinia pestis KIM], gi\|21957098\|gb\|AAM839... gi\|166213499, gi... - gi\|166213499\|ref\|ZP_02239534.1\| sulfurtransferase TusA [Yersinia pestis biovar Antiqua str. B4200300... gi\|166011690, gi... - gi\|166011690\|ref\|ZP_02232588.1\| sulfurtransferase TusA [Yersinia pestis biovar Antiqua str. E1979001... gi\|166961101, gi... - gi\|167420972\|ref\|ZP_02312725.1\| sulfurtransferase TusA [Yersinia pestis biovar Orientalis str. MG05-... gi\|167401858, gi... - gi\|167401858\|ref\|ZP_02307346.1\| sulfurtransferase TusA [Yersinia pestis biovar Antiqua str. UG05-045... gi\|167054819, gi... - gi\|167426300\|ref\|ZP_02318053.1\| sulfurtransferase TusA [Yersinia pestis biovar Mediaevalis str. K197... gi\|162421779, gi... - gi\|77633440\|ref\|ZP_00795571.1\| COG0425: Predicted redox protein, regulator of disulfide bond formati... gi\|165926318, gi... - gi\|165926318\|ref\|ZP_02222150.1\| sulfurtransferase TusA [Yersinia pestis biovar Orientalis str. F1991...	115.0	[0..1]	[80..48]

Back

Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDVFTHPDK TLDTQGLRCP EPVMMVRKTV RHMEAGQMLL ILADDPATTR DIPSFCRFME  60
   61 HQLVAQETEQ MPYRYLVRKK ESQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1dcjA
Description:	SirA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits