YRC Public Data Repository - Protein Structure Prediction

Protein:	SINR_BACLI
Organism:	Bacillus licheniformis
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SINR_BACLI.

Description	E-value	Query Range	Subject Range
gi\|52080997, gi\|... - gi\|52080997\|ref\|YP_079788.1\| transcriptional regulator [Bacillus licheniformis ATCC 14580], gi\|52004...	100.0	[0..1]	[111..1]
SINR_BACSU - HTH-type transcriptional regulator sinR OS=Bacillus subtilis GN=sinR PE=1 SV=1 gi\|221314708 - gi\|221314708\|ref\|ZP_03596513.1\| SinR [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi\|221319631 - gi\|221319631\|ref\|ZP_03600925.1\| SinR [Bacillus subtilis subsp. subtilis str. JH642] gi\|221323907 - gi\|221323907\|ref\|ZP_03605201.1\| SinR [Bacillus subtilis subsp. subtilis str. SMY] SINR_BACSU - HTH-type transcriptional regulator SinR OS=Bacillus subtilis (strain 168) GN=sinR PE=1 SV=1	100.0	[0..1]	[111..1]
gi\|74491853, gi\|... - gi\|75760672\|ref\|ZP_00740699.1\| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646],...	97.0	[0..1]	[109..8]
gi\|228750633, gi... - gi\|229010668\|ref\|ZP_04167868.1\| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048]... gi\|89157553, gi\|... - gi\|89204492\|ref\|ZP_01183069.1\| Helix-turn-helix motif [Bacillus weihenstephanensis KBAB4], gi\|891575... gi\|229132174, gi... - gi\|229132174\|ref\|ZP_04261032.1\| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196]...	95.0	[0..1]	[108..1]
gi\|9858108 - gi\|9858108\|gb\|AAG00996.1\|AF287346_1 regulator SinR [Bacillus thuringiensis]	94.0	[0..1]	[109..1]
gi\|228726212, gi... - gi\|229043120\|ref\|ZP_04190847.1\| HTH-type transcriptional regulator sinR [Bacillus cereus AH676], gi\|... gi\|228951761, gi... - gi\|228951761\|ref\|ZP_04113860.1\| HTH-type transcriptional regulator sinR [Bacillus thuringiensis sero... gi\|228920093, gi... - gi\|228920093\|ref\|ZP_04083442.1\| HTH-type transcriptional regulator sinR [Bacillus thuringiensis sero... gi\|206967979, gi... - gi\|206967979\|ref\|ZP_03228935.1\| transcriptional regulator SinR [Bacillus cereus AH1134], gi\|20673689... gi\|228639382, gi... - gi\|229143985\|ref\|ZP_04272401.1\| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24],... gi\|229126696, gi... - gi\|229126696\|ref\|ZP_04255708.1\| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4],... gi\|228704709, gi... - gi\|229078565\|ref\|ZP_04211123.1\| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2], g... gi\|229068931, gi... - gi\|229068931\|ref\|ZP_04202225.1\| HTH-type transcriptional regulator sinR [Bacillus cereus F65185], gi... gi\|29894977, gi\|... - gi\|30019433\|ref\|NP_831064.1\| SinR protein [Bacillus cereus ATCC 14579], gi\|29894977\|gb\|AAP08265.1\| S... gi\|229177788, gi... - gi\|229177788\|ref\|ZP_04305161.1\| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W], g...	93.0	[0..1]	[109..1]
gi\|254740336 - gi\|254740336\|ref\|ZP_05198027.1\| transcriptional regulator [Bacillus anthracis str. Kruger B] gi\|21399195, gi\|... - gi\|65318649\|ref\|ZP_00391608.1\| COG1396: Predicted transcriptional regulators [Bacillus anthracis str... gi\|254753723 - gi\|254753723\|ref\|ZP_05205758.1\| transcriptional regulator [Bacillus anthracis str. Vollum] gi\|254758819 - gi\|254758819\|ref\|ZP_05210846.1\| transcriptional regulator [Bacillus anthracis str. Australia 94] gi\|52144053, gi\|... - gi\|52144053\|ref\|YP_082775.1\| transcriptional regulator [Bacillus cereus E33L], gi\|51977522\|gb\|AAU190... gi\|49184213, gi\|... - gi\|49184213\|ref\|YP_027465.1\| transcriptional regulator SinR [Bacillus anthracis str. Sterne], gi\|491... gi\|49331341, gi\|... - gi\|49479785\|ref\|YP_035509.1\| transcriptional regulator [Bacillus thuringiensis serovar konkukian str... gi\|30255238, gi\|... - gi\|30261384\|ref\|NP_843761.1\| transcriptional regulator SinR [Bacillus anthracis str. Ames], gi\|30255... gi\|47526558, gi\|... - gi\|47526558\|ref\|YP_017907.1\| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'... gi\|170706389, gi... - gi\|170706389\|ref\|ZP_02896850.1\| transcriptional regulator SinR [Bacillus anthracis str. A0389], gi\|1... gi\|170686721, gi... - gi\|170686721\|ref\|ZP_02877941.1\| transcriptional regulator SinR [Bacillus anthracis str. A0465], gi\|1... gi\|190560190, gi... - gi\|190568774\|ref\|ZP_03021678.1\| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I], ... gi\|172082704, gi... - gi\|177651426\|ref\|ZP_02934215.1\| transcriptional regulator SinR [Bacillus anthracis str. A0174], gi\|1... gi\|196022621, gi... - gi\|196046437\|ref\|ZP_03113662.1\| transcriptional regulator SinR [Bacillus cereus 03BB108], gi\|1960226... gi\|196028496, gi... - gi\|196040706\|ref\|ZP_03108005.1\| transcriptional regulator SinR [Bacillus cereus NVH0597-99], gi\|1960... gi\|218902488, gi... - gi\|218902488\|ref\|YP_002450322.1\| transcriptional regulator SinR [Bacillus cereus AH820], gi\|21853956... gi\|165870458, gi... - gi\|165870458\|ref\|ZP_02215113.1\| transcriptional regulator SinR [Bacillus anthracis str. A0488], gi\|1... gi\|167512672, gi... - gi\|167639233\|ref\|ZP_02397505.1\| transcriptional regulator SinR [Bacillus anthracis str. A0193], gi\|1... gi\|167634445, gi... - gi\|167634445\|ref\|ZP_02392766.1\| transcriptional regulator SinR [Bacillus anthracis str. A0442], gi\|1... gi\|225790845, gi... - gi\|225863243\|ref\|YP_002748621.1\| transcriptional regulator SinR [Bacillus cereus 03BB102], gi\|225790... gi\|227003466, gi... - gi\|227815879\|ref\|YP_002815888.1\| transcriptional regulator SinR [Bacillus anthracis str. CDC 684], g... gi\|228845673, gi... - gi\|228913951\|ref\|ZP_04077575.1\| HTH-type transcriptional regulator sinR [Bacillus thuringiensis sero... gi\|228926412, gi... - gi\|228926412\|ref\|ZP_04089484.1\| HTH-type transcriptional regulator sinR [Bacillus thuringiensis sero... gi\|228932662, gi... - gi\|228932662\|ref\|ZP_04095536.1\| HTH-type transcriptional regulator sinR [Bacillus thuringiensis sero... gi\|228814649, gi... - gi\|228944980\|ref\|ZP_04107341.1\| HTH-type transcriptional regulator sinR [Bacillus thuringiensis sero... gi\|229090334, gi... - gi\|229090334\|ref\|ZP_04221578.1\| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42], ... gi\|229120921, gi... - gi\|229120921\|ref\|ZP_04250163.1\| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201], g... gi\|228599984, gi... - gi\|229183574\|ref\|ZP_04310798.1\| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1], ... gi\|229264541, gi... - gi\|229600133\|ref\|YP_002865801.1\| transcriptional regulator SinR [Bacillus anthracis str. A0248], gi\|... gi\|254682559 - gi\|254682559\|ref\|ZP_05146420.1\| transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi\|254726220 - gi\|254726220\|ref\|ZP_05188002.1\| transcriptional regulator [Bacillus anthracis str. A1055] gi\|254733977 - gi\|254733977\|ref\|ZP_05191691.1\| transcriptional regulator [Bacillus anthracis str. Western North Ame...	93.0	[0..1]	[109..1]
gi\|42780467, gi\|... - gi\|42780467\|ref\|NP_977714.1\| transcriptional regulator SinR [Bacillus cereus ATCC 10987], gi\|4273638...	93.0	[0..1]	[109..1]
gi\|152974807, gi... - gi\|89200949\|ref\|ZP_01179698.1\| Helix-turn-helix motif [Bacillus cereus subsp. cytotoxis NVH 391-98],...	93.0	[0..1]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGQRIKQYR KEKGYSLSEL AEKAGVAKSY LSSIERNLQT NPSIQFLEKV SAVLDVSVHT  60
   61 LLNEKDETEY DGQLDSEWEN LVRDAMASGV SKKQFREFLD YQKWKKRQEK E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.045757
Match:	1b0nA
Description:	SinR repressor dimerisation domain; SinR repressor, DNA-binding domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits