YRC Public Data Repository - Protein Structure Prediction

Protein:	SFSA_SHIFL
Organism:	Shigella flexneri
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFSA_SHIFL.

Description	E-value	Query Range	Subject Range
SFSA_SHIF8 - Sugar fermentation stimulation protein A OS=Shigella flexneri serotype 5b (strain 8401) GN=sfsA PE=3...	381.0	[0..1]	[234..1]
gi\|191166317, gi... - gi\|75230491\|ref\|ZP_00716972.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... gi\|124499784, gi... - gi\|124529628\|ref\|ZP_01700572.1\| sugar fermentation stimulation protein [Escherichia coli B], gi\|1244... gi\|194428286, gi... - gi\|75210471\|ref\|ZP_00710622.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... SFSA_ECOHS - Sugar fermentation stimulation protein A OS=Escherichia coli O9:H4 (strain HS) GN=sfsA PE=3 SV=1 SFSA_ECO24 - Sugar fermentation stimulation protein A OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=sfs... gi\|168751365, gi... - gi\|188014565\|gb\|EDU52687.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|168764349, gi... - gi\|189365656\|gb\|EDU84072.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|168755758, gi... - gi\|189357003\|gb\|EDU75422.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|188490105, gi... - gi\|75512022\|ref\|ZP_00734617.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... gi\|192931086, gi... - gi\|75258863\|ref\|ZP_00730253.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... gi\|193067728, gi... - gi\|75238851\|ref\|ZP_00722833.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... gi\|208738336, gi... - gi\|208818213\|ref\|ZP_03258533.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str... gi\|208734880, gi... - gi\|208813603\|ref\|ZP_03254932.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str... SFSA_ECOSE - Sugar fermentation stimulation protein A OS=Escherichia coli (strain SE11) GN=sfsA PE=3 SV=1 SFSA_ECO5E - Sugar fermentation stimulation protein A OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=sfsA ... SFSA_ECO8A - Sugar fermentation stimulation protein A OS=Escherichia coli O8 (strain IAI1) GN=sfsA PE=3 SV=1 gi\|217325301, gi... - gi\|217325301\|ref\|ZP_03441385.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str... SFSA_ECO55 - Sugar fermentation stimulation protein A OS=Escherichia coli (strain 55989 / EAEC) GN=sfsA PE=3 SV=1 gi\|187767676, gi... - gi\|187767676\|gb\|EDU31520.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|168770383, gi... - gi\|189360671\|gb\|EDU79090.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|189371136, gi... - gi\|189371136\|gb\|EDU89552.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|189000440, gi... - gi\|189000440\|gb\|EDU69426.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... SFSA_ECODH - Sugar fermentation stimulation protein A OS=Escherichia coli (strain K12 / DH10B) GN=sfsA PE=3 SV=1 gi\|189375686, gi... - gi\|189375686\|gb\|EDU94102.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|208729149, gi... - gi\|208809348\|ref\|ZP_03251685.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str... gi\|195938172 - gi\|195938172\|ref\|ZP_03083554.1\| sugar fermentation stimulation protein A [Escherichia coli O157:H7 s... gi\|15829404, gi\|... - gi\|15829404\|ref\|NP_308177.1\| sugar fermentation stimulation protein A [Escherichia coli O157:H7 str.... EG10949 - sugar fermentation stimulation protein A / Sugar fermentation stimulation protein A; overexpression ... SFSA_ECO57 - Sugar fermentation stimulation protein A OS=Escherichia coli O157:H7 GN=sfsA PE=3 SV=1 gi\|89107027, gi\|... - gi\|89107027\|ref\|AP_000807.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... EG10949 - sugar fermentation stimulation protein A / Sugar fermentation stimulation protein A; overexpression ... gi\|15799830, gi\|... - gi\|15799830\|ref\|NP_285842.1\| sugar fermentation stimulation protein A [Escherichia coli O157:H7 EDL9... SFSA_ECOBW - Sugar fermentation stimulation protein A OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=sfsA ... gi\|226840670, gi... - gi\|254037564\|ref\|ZP_04871641.1\| sugar fermentation stimulation protein [Escherichia sp. 1_1_43], gi\|... gi\|254791281, gi... - gi\|254791281\|ref\|YP_003076118.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... SFSA_ECOLC - Sugar fermentation stimulation protein A OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) ... SFSA_ECOLI - Sugar fermentation stimulation protein A - Escherichia coli	380.0	[0..1]	[234..1]
gi\|251783706, gi... - gi\|251783706\|ref\|YP_002998010.1\| hypothetical protein B21_00144 [Escherichia coli BL21], gi\|24237597... gi\|253972167, gi... - gi\|254160266\|ref\|YP_003043374.1\| sugar fermentation stimulation protein A [Escherichia coli B str. R... gi\|254287069, gi... - gi\|254287069\|ref\|YP_003052817.1\| sugar fermentation stimulation protein A [Escherichia coli BL21(DE3... gi\|194421926, gi... - gi\|83585463\|ref\|ZP_00924108.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric...	380.0	[0..1]	[234..1]
SFSA_SHIDS - Sugar fermentation stimulation protein A OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=sfsA P...	378.0	[0..1]	[234..1]
SFSA_ECO81 - Sugar fermentation stimulation protein A OS=Escherichia coli O81 (strain ED1a) GN=sfsA PE=3 SV=1 SFSA_ECO45 - Sugar fermentation stimulation protein A OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=sfsA PE=... SFSA_ECOL6 - Sugar fermentation stimulation protein A OS=Escherichia coli O6 GN=sfsA PE=3 SV=1 SFSA_ECOUT - Sugar fermentation stimulation protein A OS=Escherichia coli (strain UTI89 / UPEC) GN=sfsA PE=3 SV=1 SFSA_ECOL5 - Sugar fermentation stimulation protein A OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=sfsA ... SFSA_ECOL6 - Sugar fermentation stimulation protein A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UP... gi\|75240263, gi\|... - gi\|75240263\|ref\|ZP_00724210.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... SFSA_ECO27 - Sugar fermentation stimulation protein A OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=sfs... gi\|227838078, gi... - gi\|227884940\|ref\|ZP_04002745.1\| sugar fermentation stimulation protein A [Escherichia coli 83972], g... SFSA_ECOK1 - Sugar fermentation stimulation protein A OS=Escherichia coli O1:K1 / APEC GN=sfsA PE=3 SV=1 gi\|237704305, gi... - gi\|237704305\|ref\|ZP_04534786.1\| sugar fermentation stimulation protein A [Escherichia sp. 3_2_53FAA]... sp\|B7UIJ0\|SFSA_ECO27 - Sugar fermentation stimulation protein A OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=sfs...	378.0	[0..1]	[234..1]
SFSA_SHESM - Sugar fermentation stimulation protein homolog OS=Shewanella sp. (strain MR-4) GN=sfsA PE=3 SV=1	377.0	[0..1]	[232..1]
SFSA_SHESR - Sugar fermentation stimulation protein homolog OS=Shewanella sp. (strain MR-7) GN=sfsA PE=3 SV=1	377.0	[0..1]	[232..1]
gi\|83569727, gi\|... - gi\|83569727\|ref\|ZP_00921177.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Shigella...	375.0	[0..1]	[234..1]
SFSA_SHISS - Sugar fermentation stimulation protein A OS=Shigella sonnei (strain Ss046) GN=sfsA PE=3 SV=1	374.0	[0..1]	[234..1]
SFSA_SHIB3 - Sugar fermentation stimulation protein A OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)...	372.0	[0..1]	[234..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFSPPLQRA TLIQRYKRFL ADVITPDGRE LTLHCPNTGA MTGCATPGDT VWYSTSDNTK  60
   61 RKYPHTWELT QSQSGAFICV NTLWANRLTK EAILNESISE LSGYSSLKSE VKYGSERSRI 120
  121 DFMLQADSRP DCYIEVKSVT LAENEQGYF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.336	N/A	N/A	c.55.6	DNA repair protein MutS, domain II
View	Download	0.294	N/A	N/A	c.55.6	DNA repair protein MutS, domain II
View	Download	0.244	N/A	N/A	c.55.6	DNA repair protein MutS, domain II
View	Download	0.240	N/A	N/A	c.55.3	Ribonuclease H-like
View	Download	0.202	N/A	N/A	c.55.6	DNA repair protein MutS, domain II

Predicted Domain #2

Region A:
Residues: [150-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDAVTERGQK HLRELMSVAA EGQRAVIFFA VLHSAITRFS PARHIDEKYA QLLSEAQQRG  60
   61 VEILAYKAEI SAEGMALKKS LPVTL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits