YRC Public Data Repository - Protein Structure Prediction

Protein:	SEM1_NEUCR
Organism:	Neurospora crassa
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEM1_NEUCR.

Description	E-value	Query Range	Subject Range
gi\|42550616, gi\|... - gi\|46116298\|ref\|XP_384167.1\| hypothetical protein FG03991.1 [Gibberella zeae PH-1], gi\|42550616\|gb\|E...	107.0	[0..7]	[79..3]
gi\|88179995, gi\|... - gi\|88179995\|gb\|EAQ87463.1\| predicted protein [Chaetomium globosum CBS 148.51], gi\|116194968\|ref\|XP_0...	79.0	[0..3]	[91..7]
gi\|169608137, gi... - gi\|169608137\|ref\|XP_001797488.1\| hypothetical protein SNOG_07135 [Phaeosphaeria nodorum SN15], gi\|11...	75.0	[0..4]	[85..7]
gi\|151942336 - gi\|151942336\|gb\|EDN60692.1\| suppressor of exocyst mutations [Saccharomyces cerevisiae YJM789] SEM1 - Component of the lid subcomplex of the regulatory subunit of the 26S proteasome; involved in mRNA ex... gi\|190404701 - gi\|190404701\|gb\|EDV07968.1\| 26 proteasome complex subunit SEM1 [Saccharomyces cerevisiae RM11-1a] SEM1_YEAST - 26S proteasome complex subunit SEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEM1...	73.0	[0..1]	[84..1]
gi\|145010687, gi... - gi\|39940352\|ref\|XP_359713.1\| hypothetical protein MGG_05064 [Magnaporthe grisea 70-15], gb\|EAA52372....	73.0	[0..4]	[91..7]
gi\|67521572, gi\|... - gi\|67521572\|ref\|XP_658849.1\| hypothetical protein AN1245.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	71.0	[0..7]	[79..4]
gi\|114197171, gi... - gi\|115491367\|ref\|XP_001210311.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114197171\|gb\|EA...	69.0	[0..28]	[79..22]
gi\|50284913, gi\|... - gi\|50284913\|ref\|XP_444884.1\| hypothetical protein CAGL0A02728g [Candida glabrata CBS138], gi\|4952418... gi\|49524186 - gi\|49524186\|emb\|CAG57777.1\| unnamed protein product [Candida glabrata]	62.0	[0..29]	[84..12]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTQPKNDA KSTEPKPEQP VTEKKTAVLE EDDEFEDFPV DDWEAEDTEA AKGNNEAKHL  60
   61 WEESWDDDDT SDDFSAQLKE ELKKVEAAKK R

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.08
Match:	1iyjA
Description:	STRUCTURE OF A BRCA2-DSS1 COMPLEX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits