YRC Public Data Repository - Protein Structure Prediction

Protein:	SECG_PSESY
Organism:	Pseudomonas syringae pv. syringae
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SECG_PSESY.

Description	E-value	Query Range	Subject Range
gi\|62129435, gi\|... - gi\|62181802\|ref\|YP_218219.1\| protein-export membrane protein [Salmonella enterica subsp. enterica se...	125.0	[0..1]	[110..65]
gi\|71734190, gi\|... - gi\|71734190\|ref\|YP_276314.1\| preprotein translocase subunit SecG [Pseudomonas syringae pv. phaseolic...	124.0	[0..1]	[126..1]
gi\|213966650, gi... - gi\|213966650\|ref\|ZP_03394801.1\| preprotein translocase, SecG subunit [Pseudomonas syringae pv. tomat... gi\|28854879, gi\|... - gi\|28871627\|ref\|NP_794246.1\| preprotein translocase subunit SecG [Pseudomonas syringae pv. tomato st... tr\|Q87WQ2\|Q87WQ2... - Preprotein translocase, SecG subunit OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=secG PE=4...	123.0	[0..1]	[126..1]
gi\|110807041, gi... - gi\|110807041\|ref\|YP_690561.1\| protein export - membrane protein [Shigella flexneri 5 str. 8401], gi\|...	118.0	[0..1]	[110..25]
gi\|26110186, gi\|... - gi\|26249758\|ref\|NP_755798.1\| protein-export membrane protein [Escherichia coli CFT073], gi\|26110186\|... gi\|91212596, gi\|... - gi\|91212596\|ref\|YP_542582.1\| protein-export membrane protein SecG [Escherichia coli UTI89], gi\|91074...	118.0	[0..1]	[110..16]
gi\|126197729, gi... - gi\|254244351\|ref\|ZP_04937673.1\| secretion protein SecG [Pseudomonas aeruginosa 2192], gi\|194555336\|r... gi\|126170448, gi... - gi\|254238517\|ref\|ZP_04931840.1\| secretion protein SecG [Pseudomonas aeruginosa C3719], gi\|194549502\|... SECG_PSEAE - Protein-export membrane protein SecG OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS ... gi\|152989544, gi... - gi\|152989544\|ref\|YP_001350789.1\| preprotein translocase subunit SecG [Pseudomonas aeruginosa PA7], g... SECG_PSEAE - Protein-export membrane protein secG OS=Pseudomonas aeruginosa GN=secG PE=3 SV=1 gi\|218774070, gi... - gi\|218893842\|ref\|YP_002442711.1\| preprotein translocase subunit SecG [Pseudomonas aeruginosa LESB58]...	116.0	[0..1]	[126..1]
gi\|71280755, gi\|... - gi\|71280755\|ref\|YP_270121.1\| preprotein translocase, SecG subunit [Colwellia psychrerythraea 34H], g...	115.0	[0..1]	[125..1]
gi\|226721237, gi... - gi\|67158741\|ref\|ZP_00419602.1\| Preprotein translocase SecG subunit [Azotobacter vinelandii AvOP], gi... gi\|67158741 - gi\|67158741\|ref\|ZP_00419602.1\| Preprotein translocase SecG subunit [Azotobacter vinelandii AvOP]	115.0	[0..3]	[126..5]
gi\|116052894, gi... - gi\|116052894\|ref\|YP_793211.1\| preprotein translocase subunit SecG [Pseudomonas aeruginosa UCBPP-PA14...	115.0	[0..1]	[126..1]
gi\|145565621, gi... - gi\|77816406\|ref\|ZP_00815597.1\| Preprotein translocase SecG subunit [Shewanella putrefaciens CN-32], ... gi\|120557990, gi... - gi\|82741029\|ref\|ZP_00903759.1\| Preprotein translocase SecG subunit [Shewanella sp. W3-18-1], gi\|8272...	115.0	[0..2]	[112..1]

Back

Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLETVVIVFH LLGALGVVAL VLLQQGKGAD AGASFGAGAS NTVFGGQGTS TFLSKFTAIL  60
   61 AACFFITSLG LGYFAKEKAQ QLTQVGLPDP AVLEVKQKPA ADDVPVLEGQ KPAAVPADVP 120
  121 QAPEKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	2akhX
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits