YRC Public Data Repository - Protein Structure Prediction

Protein:	SECE_STRGB
Organism:	Streptomyces galbus
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SECE_STRGB.

Description	E-value	Query Range	Subject Range
gi\|92432232, gi\|... - gi\|92910144\|ref\|ZP_01278920.1\| SecE subunit of protein translocation complex [Mycobacterium sp. JLS]...	96.0	[0..2]	[94..114]
gi\|145218180, gi... - gi\|89338460\|ref\|ZP_01191225.1\| SecE subunit of protein translocation complex [Mycobacterium flavesce...	92.0	[0..2]	[94..58]
gi\|108797895, gi... - gi\|108797895\|ref\|YP_638092.1\| preprotein translocase subunit SecE [Mycobacterium sp. MCS], gi\|108768... gi\|119693079, gi... - gi\|92913608\|ref\|ZP_01282236.1\| SecE subunit of protein translocation complex [Mycobacterium sp. KMS]...	90.0	[0..2]	[94..54]
gi\|78702843, gi\|... - gi\|78702843\|ref\|ZP_00867265.1\| SecE subunit of protein translocation complex [Alkalilimnicola ehrlic...	86.0	[0..20]	[94..48]
gi\|95927247, gi\|... - gi\|95927247\|ref\|ZP_01310008.1\| hypothetical protein CburR_01000940 [Coxiella burnetii RSA 331], gi\|1...	84.0	[0..27]	[94..57]
gi\|154355570, gi... - gi\|94491349\|ref\|ZP_01298563.1\| hypothetical protein CburD_01001580 [Coxiella burnetii Dugway 7E9-12]... gi\|120576151, gi... - gi\|153208138\|ref\|ZP_01946566.1\| preprotein translocase, SecE subunit [Coxiella burnetii 'MSU Goat Q1... gi\|212012320, gi... - gi\|212218058\|ref\|YP_002304845.1\| protein translocase subunit [Coxiella burnetii CbuK_Q154], gi\|21201... gi\|165917667, gi... - gi\|165918639\|ref\|ZP_02218725.1\| preprotein translocase, SecE subunit [Coxiella burnetii RSA 334], gi... gi\|29540838, gi\|... - gi\|29653576\|ref\|NP_819268.1\| protein translocase subunit [Coxiella burnetii RSA 493], gi\|29540838\|gb... gi\|212213264, gi... - gi\|212213264\|ref\|YP_002304200.1\| protein translocase subunit [Coxiella burnetii CbuG_Q212], gi\|21201...	84.0	[0..27]	[94..57]
gi\|75255008 - gi\|75255008\|ref\|ZP_00726929.1\| COG0690: Preprotein translocase subunit SecE [Escherichia coli E22]	83.0	[0..23]	[94..53]
gi\|108774027, gi... - gi\|229900554\|ref\|ZP_04515680.1\| preprotein translocase membrane subunit [Yersinia pestis Nepal516], ... gi\|161484891 - gi\|161484891\|ref\|NP_667816.2\| preprotein translocase subunit SecE [Yersinia pestis KIM] gi\|186893633, gi... - gi\|186893633\|ref\|YP_001870745.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis PB... gi\|229704187, gi... - gi\|229837499\|ref\|ZP_04457661.1\| preprotein translocase membrane subunit [Yersinia pestis Pestoides A... gi\|77635957, gi\|... - gi\|77635957\|ref\|ZP_00798036.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pestis Angola]... gi\|229695801, gi... - gi\|229839435\|ref\|ZP_04459594.1\| preprotein translocase membrane subunit [Yersinia pestis biovar Orie... gi\|77631228, gi\|... - gi\|77631228\|ref\|ZP_00793814.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pseudotubercul... Q66FQ8\|Q66FQ8_YERPS - Preprotein translocase SecE subunit - Yersinia pseudotuberculosis gi\|25301347 - pir\|\|AI0456 preprotein translocase SecE chain [imported] - Yersinia pestis (strain CO92) gi\|218930758, gi... - gi\|218930758\|ref\|YP_002348633.1\| preprotein translocase subunit SecE [Yersinia pestis CO92], gi\|1612... gi\|161511332 - gi\|161511332\|ref\|NP_994409.2\| preprotein translocase subunit SecE [Yersinia pestis biovar Microtus s... gi\|51587914, gi\|... - gi\|51594632\|ref\|YP_068823.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis IP 329... gi\|165919658, gi... - gi\|165928319\|ref\|ZP_02224151.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Orienta... gi\|165938231, gi... - gi\|89103178\|ref\|ZP_01175767.1\| COG0690: Preprotein translocase subunit SecE [Yersinia pestis biovar ... gi\|166012041, gi... - gi\|166012041\|ref\|ZP_02232939.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|108781529, gi... - gi\|108809616\|ref\|YP_653532.1\| preprotein translocase subunit SecE [Yersinia pestis Antiqua], gi\|1087... gi\|166214395, gi... - gi\|166214395\|ref\|ZP_02240430.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|167048206, gi... - gi\|167402426\|ref\|ZP_02307886.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Antiqua... gi\|153997213, gi... - gi\|153997213\|ref\|ZP_02022320.1\| preprotein translocase SecE subunit [Yersinia pestis CA88-4125], gi\|... gi\|166957159, gi... - gi\|167422948\|ref\|ZP_02314701.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Orienta... gi\|145212690, gi... - gi\|145600994\|ref\|YP_001165070.1\| preprotein translocase subunit SecE [Yersinia pestis Pestoides F], ... gi\|167054185, gi... - gi\|167426803\|ref\|ZP_02318556.1\| preprotein translocase, SecE subunit [Yersinia pestis biovar Mediaev... gi\|170022591, gi... - gi\|170022591\|ref\|YP_001719096.1\| preprotein translocase subunit SecE [Yersinia pseudotuberculosis YP...	83.0	[0..23]	[94..53]
gi\|21957174, gi\|... - gi\|22124393\|ref\|NP_667816.1\| translocase [Yersinia pestis KIM], gi\|21957174\|gb\|AAM84067.1\|AE013648_9... gi\|45437736, gi\|... - gi\|45442870\|ref\|NP_994409.1\| translocase [Yersinia pestis biovar Microtus str. 91001], gi\|45437736\|g...	82.0	[0..23]	[94..58]
gi\|110617379, gi... - gi\|110807831\|ref\|YP_691351.1\| preprotein translocase subunit SecE [Shigella flexneri 5 str. 8401], g... gi\|30042996, gi\|... - gi\|30064736\|ref\|NP_838907.1\| preprotein translocase subunit SecE [Shigella flexneri 2a str. 2457T], ...	82.0	[0..23]	[94..53]

Back

Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDAVGSIDT PDAQDEVPES KKTRKGGKRA KKGPLKRLAT FYRQIIAELR KVVWPTRNQL  60
   61 TSYTTVVIFF VAIMIRLVTV IDYGLNHAAK YVFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	2akhZ
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits