YRC Public Data Repository - Protein Structure Prediction

Protein:	SBMA_ECOLI
Organism:	Escherichia coli
Length:	406 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SBMA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|109099160 - gi\|109099160\|ref\|XP_001096136.1\| PREDICTED: ATP-binding cassette, sub-family B (MDR/TAP), member 9 [...	241.0	[0..7]	[404..251]
gi\|114647673 - gi\|114647673\|ref\|XP_509453.2\| PREDICTED: similar to KIAA1520 protein [Pan troglodytes]	241.0	[0..7]	[404..282]
gi\|82747986, gi\|... - gi\|82747986\|ref\|ZP_00910477.1\| ATPas [Clostridium beijerincki NCIMB 8052], gi\|82724175\|gb\|EAP58933.1...	238.0	[0..67]	[405..34]
gi\|160427679, gi... - gi\|160879013\|ref\|YP_001557981.1\| ABC transporter related [Clostridium phytofermentans ISDg], gi\|1604...	236.0	[0..67]	[398..37]
gi\|20807317, gi\|... - gi\|20807317\|ref\|NP_622488.1\| ABC-type multidrug/protein/lipid transport system, ATPase component [Th... gi\|20807317 - gi\|20807317\|ref\|NP_622488.1\| ABC-type multidrug/protein/lipid transport system, ATPase component [Th...	236.0	[0..68]	[405..15]
gi\|52785918, gi\|... - gi\|52785918\|ref\|YP_091747.1\| YfiC [Bacillus licheniformis ATCC 14580], gi\|52348420\|gb\|AAU41054.1\| Yf...	236.0	[0..67]	[404..23]
gi\|26006275 - gi\|26006275\|dbj\|BAC41480.1\| mKIAA1520 protein [Mus musculus]	235.0	[0..7]	[404..130]
gi\|158321697, gi... - gi\|158321697\|ref\|YP_001514204.1\| ABC transporter related [Alkaliphilus oremlandii OhILAs], gi\|158141...	234.0	[0..67]	[406..37]
Y288_THEMA - Uncharacterized ABC transporter ATP-binding protein TM_0288 OS=Thermotoga maritima GN=TM_0288 PE=3 S... Y288_THEMA - Uncharacterized ABC transporter ATP-binding protein TM_0288 OS=Thermotoga maritima (strain ATCC 4358...	234.0	[0..67]	[400..21]
gi\|58257696 - gi\|58257696\|dbj\|BAA96044.2\| KIAA1520 protein [Homo sapiens]	234.0	[0..7]	[404..154]

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Predicted Domain #1

Region A:
Residues: [1-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKSFFPKPG TFFLSAFVWA LIAVIFWQAG GGDWVARITG ASGQIPISAA RFWSLDFLIF  60
   61 YAYYIVCVGL FALFWFIYSP HRWQYWSILG TALIIFVTWF LVEVGVAVNA WYAPFYDLIQ 120
  121 TALSSPHKVT IEQFYREVGV FLGIALIAVV ISVLNNFFVS HYVFRWRTAM NEYYMANWQQ 180
  181 LRHIEGAAQR VQEDTMRFAS TLENMGVSFI NAIMTLIAFL PVLVTLSAHV PELPIIGHIP 240
  241 YGLVIAAIVW SLMGTGLLAV VGIKLPGLEF KNQRVEAAYR KELVYGEDDA TRATPPTVRE 300
  301 LFSAVRKNYF RLYFHYMYFN IARILYLQVD NVFGLFLLFP SIVAGTITLG LMTQITNVFG 360
  361 QVRGAFQYLI NSWTTLVELM SIYKRLRSFE HELDGDKIQE VTHTLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	2hydA
Description:	No description for 2hydA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits