YRC Public Data Repository - Protein Structure Prediction

Protein:	SAPC_ECOLI
Organism:	Escherichia coli
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SAPC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|150390667, gi... - gi\|77683645\|ref\|ZP_00799091.1\| Binding-protein-dependent transport systems inner membrane component ...	251.0	[0..5]	[296..18]
gi\|158140582, gi... - gi\|158320383\|ref\|YP_001512890.1\| binding-protein-dependent transport systems inner membrane componen...	245.0	[0..13]	[296..25]
gi\|78356230, gi\|... - gi\|78356230\|ref\|YP_387679.1\| putative permease of ABC transporter [Desulfovibrio desulfuricans subsp...	243.0	[0..1]	[295..5]
gi\|56378846, gi\|... - gi\|56419004\|ref\|YP_146322.1\| dipeptide ABC transporter (permease) [Geobacillus kaustophilus HTA426],...	243.0	[0..2]	[296..10]
gi\|10172642, gi\|... - gi\|15612593\|ref\|NP_240896.1\| oligopeptide ABC transporter (permease) [Bacillus halodurans C-125], gi... gi\|25296705 - pir\|\|F83653 oligopeptide ABC transporter (permease) BH0030 [imported] - Bacillus halodurans (strain ...	241.0	[0..2]	[296..12]
gi\|86163792, gi\|... - gi\|87120954\|ref\|ZP_01076846.1\| dipeptide transport system permease protein 2 [Marinomonas sp. MED121...	241.0	[0..9]	[296..23]
DPPC_BACPE - Dipeptide transport system permease protein DppC OS=Bacillus pseudofirmus (strain OF4) GN=dppC PE=3 ... gi\|11277274, gi\|... - gi\|1813497\|gb\|AAB41690.1\| dipeptide transporter protein DppC [Bacillus firmus], pir\|\|T44637 dipeptid... DPPC_BACPF - Dipeptide transport system permease protein dppC OS=Bacillus pseudofirmus GN=dppC PE=3 SV=1	241.0	[0..3]	[296..16]
gi\|23100522, gi\|... - gi\|23100522\|ref\|NP_693989.1\| oligopeptide ABC transporter permease [Oceanobacillus iheyensis HTE831]...	238.0	[0..2]	[296..11]
gi\|89100173, gi\|... - gi\|89100173\|ref\|ZP_01173041.1\| dipeptide ABC transporter (permease) [Bacillus sp. NRRL B-14911], gi\|...	236.0	[0..3]	[296..28]
gi\|134052991, gi... - gi\|88945336\|ref\|ZP_01148513.1\| oligopeptide ABC transporter permease [Desulfotomaculum reducens MI-1...	235.0	[0..2]	[295..7]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYDSVYSEK RPPGTLRTAW RKFYSDASAM VGLYGCAGLA VLCIFGGWFA PYGIDQQFLG  60
   61 YQLLPPSWSR YGEVSFFLGT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDLGRDVLSR LLSGAAPTVG GAFVVTLAAT ICGLVLGTFA GATHGLRSAV LNHILDTLLA  60
   61 IPSLLLAIIV VAFAGPSLSH AMFAVWLALL PRMVRSIYSM VHDELEKEYV IAARLDGAST 120
  121 LNILWFAVMP NITAGLVTEI TRALSMAILD IAALGFLDLG AQLPSPEWGA MLGDALELIY 180
  181 VAPWTVMLPG AAIMISVLLV NLLGDGVRRA IIAGVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.39794
Match:	2onkC
Description:	No description for 2onkC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits