YRC Public Data Repository - Protein Structure Prediction

Protein:	SC61B_KLULA, S61...
Organism:	Kluyveromyces lactis
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SC61B_KLULA, S61....

Description	E-value	Query Range	Subject Range
gi\|44981710 - gi\|44981710\|gb\|AAS51460.1\| ACR234Cp [Ashbya gossypii ATCC 10895] gi\|44981710, gi\|... - gi\|45185920\|ref\|NP_983636.1\| ACR234Cp [Ashbya gossypii ATCC 10895], gi\|44981710\|gb\|AAS51460.1\| ACR23...	116.0	[0..3]	[88..5]
gi\|18000273 - gi\|18000273\|gb\|AAL54898.1\|AF159543_1 transport protein Sec61 beta subunit [Lapemis hardwickii]	109.0	[0..1]	[85..11]
gi\|50736212 - gi\|50736212\|ref\|XP_419082.1\| PREDICTED: similar to Protein transport protein SEC61 beta subunit [Gal...	108.0	[0..1]	[85..11]
gi\|109476493, gi... - gi\|27714473\|ref\|XP_216400.1\| PREDICTED: similar to Protein transport protein Sec61 beta subunit [Rat...	108.0	[0..1]	[85..11]
SC6B2_YEAST - Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH2 PE=1... SBH2 - Ssh1p-Sss1p-Sbh2p complex component, involved in protein translocation into the endoplasmic reticulu... ORFP:6100 - YER019C-A, Contig c425 46829-47095 reverse complement gi\|190405581 - gi\|190405581\|gb\|EDV08848.1\| protein transport protein SEC61 beta 2 subunit [Saccharomyces cerevisiae... gi\|151944729 - gi\|151944729\|gb\|EDN62988.1\| conserved protein [Saccharomyces cerevisiae YJM789]	108.0	[0..2]	[87..3]
SC61B_PONAB - Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3 ENSPTRT00000039176 - null tr\|G3H7H4\|G3H7H4... - Protein transport protein Sec61 subunit beta OS=Cricetulus griseus GN=I79_006305 PE=4 SV=1 CCDS6741.1_1 - null SC61B_PONPY - Protein transport protein Sec61 subunit beta - Pongo pygmaeus (Orangutan) SEC61B - Sec61 beta subunit SC61B_CANLF - Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B PE=1 SV=2 gi\|149740327 - gi\|149740327\|ref\|XP_001504106.1\| PREDICTED: similar to protein translocation complex beta subunit [E... gi\|109110979 - gi\|109110979\|ref\|XP_001109722.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta] ENSCJAT00000021945 - null	108.0	[0..1]	[85..11]
gi\|84202411, gi\|... - gi\|84202411\|gb\|AAI11653.1\| Sec61 beta subunit [Bos taurus], gi\|115497008\|ref\|NP_001068760.1\| Sec61 b...	108.0	[0..1]	[85..11]
SC61B_MOUSE - Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3 gi\|51980602 - gb\|AAH82171.1\| Unknown (protein for MGC:98571) [Xenopus laevis]	107.0	[0..1]	[85..11]
gi\|109131069 - gi\|109131069\|ref\|XP_001102187.1\| PREDICTED: Sec61 beta subunit [Macaca mulatta]	107.0	[0..1]	[85..11]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSVPGGQR TLQKRRNAQL QKEKKANQTP ASPRQAGFGG SSSSILKLYT DEANGLRVDP  60
   61 LVVLFLAVAF VFSVVALHVV AKVSGKIF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.293	d.317.1	Description not found.
View	Download	0.285	d.226.1	GIY-YIG endonuclease
View	Download	0.285	d.226.1	GIY-YIG endonuclease
View	Download	0.270	d.50.3	PI-Pfui intein middle domain
View	Download	0.270	d.50.3	PI-Pfui intein middle domain
View	Download	0.264	a.61.1	Retroviral matrix proteins
View	Download	0.260	d.2.1	Lysozyme-like
View	Download	0.258	d.50.3	PI-Pfui intein middle domain
View	Download	0.225	d.50.3	PI-Pfui intein middle domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits