YRC Public Data Repository - Protein Structure Prediction

Protein:	S10AB_RABIT
Organism:	Oryctolagus cuniculus
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for S10AB_RABIT.

Description	E-value	Query Range	Subject Range
gi\|109016674 - gi\|109016674\|ref\|XP_001108718.1\| PREDICTED: similar to Protein S100-A11 (S100 calcium-binding protei...	128.0	[0..1]	[101..434]
gi\|34811430, gi\|... - gi\|34811430\|pdb\|1NSH\|B Chain B, Solution Structure Of Rabbit Apo-S100a11 (19 Models), gi\|34811429\|pd...	125.0	[0..2]	[102..1]
gi\|76612513 - gi\|76612513\|ref\|XP_595126.2\| PREDICTED: similar to Calgizzarin (S100 calcium-binding protein A11) (S...	123.0	[0..2]	[100..84]
gi\|50761685 - gi\|50761685\|ref\|XP_429152.1\| PREDICTED: similar to S100Z protein [Gallus gallus]	118.0	[0..1]	[97..367]
gi\|109504576 - gi\|109504576\|ref\|XP_225088.3\| PREDICTED: similar to S100 calcium binding protein A11 [Rattus norvegi...	117.0	[0..3]	[99..61]
gi\|60829601, gi\|... - gi\|61371878\|gb\|AAX43748.1\| S100 calcium binding protein A11 [synthetic construct], gi\|61369077\|gb\|AA...	117.0	[0..2]	[101..5]
gi\|61358877, gi\|... - gi\|61358882\|gb\|AAX41635.1\| S100 calcium binding protein A11 [synthetic construct], gi\|61358877\|gb\|AA... S100A11 - S100 calcium binding protein A11 HGNC:10488\|MIM:6... - calcium binding protein A11 gi\|55593153 - gi\|55593153\|ref\|XP_514427.1\| PREDICTED: S100 calcium binding protein A11 (calgizzarin) [Pan troglody...	116.0	[0..2]	[101..5]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRPTETERC IESLIAVFQK YAGKDGHSVT LSKTEFLSFM NTELAAFTKN QKDPGVLDRM  60
   61 MKKLDLNSDG QLDFQEFLNL IGGLAVACHE SFVKAAPPQK RF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1nshA
Description:	Calcyclin (S100)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits