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View Structure Prediction Details

Protein: SNRPN
Organism: Homo sapiens
Length: 240 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNRPN.

Description E-value Query
Range		 Subject
Range
gi|5870129 - gi|5870129|gb|AAD54488.1| small nuclear ribonucleoprotein B [Homo sapiens]
 1.0E-29 [1..211] [1..214]
gi|114656016 - gi|114656016|ref|XP_523182.2| PREDICTED: hypothetical protein [Pan troglodytes]
 1.0E-25 [1..212] [38..249]
SPT5H_DANRE - Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1 SV=1
 4.0E-25 [10..240] [701..958]
gi|112305, gi|206694 - gi|206694|gb|AAA42059.1| snRNP-associated polypeptide N, pir||A35448 small nuclear ribonucleoprotein...
 1.0E-24 [1..212] [1..212]
RSMB_MACEU - Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1
 2.0E-24 [1..167] [1..167]
gi|114680545 - gi|114680545|ref|XP_001155793.1| PREDICTED: hypothetical protein LOC470014 isoform 1 [Pan troglodyte...
gi|119631003, gi... - gi|45708426|gb|AAH03530.1| SNRPB protein [Homo sapiens], gi|194375339|dbj|BAG62782.1| unnamed protei...
gi|109092660 - gi|109092660|ref|XP_001113926.1| PREDICTED: small nuclear ribonucleoprotein polypeptides B and B1 is...
 3.0E-24 [1..168] [1..168]
gi|86438323 - gi|86438323|gb|AAI12635.1| SNRPB protein [Bos taurus]
 4.0E-24 [1..168] [1..168]

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Predicted Domain #1
Region A:
Residues: [1-82] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK IKPKNAKQPE  60
   61 REEKRVLGLV LLRGENLVSM TV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.39794
Match: 1d3bB
Description: B core SNRNP protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
9.36615441177233 bayes_pls_golite062009
RNA binding 5.81718051012035 bayes_pls_golite062009
nucleic acid binding 2.69031444148163 bayes_pls_golite062009
mRNA binding 2.57166143288861 bayes_pls_golite062009
binding 2.04681172391952 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [83-240] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGPPPKDTGI ARVPLAGAAG GPGVGRAAGR GVPAGVPIPQ APAGLAGPVR GVGGPSQQVM  60
   61 TPQGRGTVAA AAVAATASIA GAPTQYPPGR GTPPPPVGRA TPPPGIMAPP PGMRPPMGPP 120
  121 IGLPPARGTP IGMPPPGMRP PPPGIRGPPP PGMRPPRP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.154902
Match: 1y0fB
Description: No description for 1y0fB was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle