YRC Public Data Repository - Protein Structure Prediction

Protein:	RS6_NEIMB
Organism:	Neisseria meningitidis serogroup B
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS6_NEIMB.

Description	E-value	Query Range	Subject Range
RS6_NEIM0 - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rpsF PE=3 SV=1 gi\|254671746 - gi\|254671746\|emb\|CBA09568.1\| 30S ribosomal protein S6 [Neisseria meningitidis alpha153] RS6_NEIMF - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / D... gi\|254668664, gi... - gi\|254805122\|ref\|YP_003083343.1\| 30S ribosomal protein S6 [Neisseria meningitidis], gi\|254668664\|emb... RS6_NEIMA - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup A GN=rpsF PE=3 SV=1 gi\|11276540 - gi\|11276540\|pir\|\|D81845 30S ribosomal protein S6 NMA1537 [imported] - Neisseria meningitidis (strain... RS6_NEIMA - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=rpsF ...	161.0	[0..1]	[122..1]
gi\|33566505 - gi\|33566505\|emb\|CAE37761.1\| 30s ribosomal protein s6 [Bordetella parapertussis] gi\|33597054 - gi\|33597054\|ref\|NP_884697.1\| 30S ribosomal protein S6 [Bordetella parapertussis 12822] gi\|33568499, gi\|... - gi\|33600899\|ref\|NP_888459.1\| 30S ribosomal protein S6 [Bordetella bronchiseptica RB50], gi\|33568499\|...	160.0	[0..1]	[108..32]
RS6_DECAR - 30S ribosomal protein S6 OS=Dechloromonas aromatica (strain RCB) GN=rpsF PE=3 SV=1	159.0	[0..1]	[114..1]
gi\|239999183 - gi\|239999183\|ref\|ZP_04719107.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae 35/02] gi\|240118216 - gi\|240118216\|ref\|ZP_04732278.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae PID1] RS6_NEIG1 - 30S ribosomal protein S6 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpsF PE=3 SV=1 gi\|240123764 - gi\|240123764\|ref\|ZP_04736720.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae PID332] gi\|240016351 - gi\|240016351\|ref\|ZP_04722891.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae FA6140] gi\|240115918 - gi\|240115918\|ref\|ZP_04729980.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae PID18] gi\|240125955 - gi\|240125955\|ref\|ZP_04738841.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae SK-92-679] RS6_NEIGO - 30S ribosomal protein S6 OS=Neisseria gonorrhoeae GN=rpsF PE=3 SV=1 gi\|254493954, gi... - gi\|254493954\|ref\|ZP_05107125.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae 1291], gi\|226512994\|...	159.0	[0..1]	[122..1]
gi\|166961388, gi... - gi\|167420582\|ref\|ZP_02312335.1\| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. MG05-10... gi\|229695559, gi... - gi\|229839193\|ref\|ZP_04459352.1\| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ... gi\|167423107, gi... - gi\|167423107\|ref\|ZP_02314860.1\| ribosomal protein S6 [Yersinia pestis biovar Mediaevalis str. K19730... gi\|229836649, gi... - gi\|229836649\|ref\|ZP_04456815.1\| 30S ribosomal subunit protein S6 [Yersinia pestis Pestoides A], gi\|2... RS6_YERPY - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rpsF PE=3 SV=... RS6_YERPB - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rpsF PE=3 SV=1 gi\|165919840, gi... - gi\|165928153\|ref\|ZP_02223985.1\| ribosomal protein S6 [Yersinia pestis biovar Orientalis str. F199101... gi\|165989687, gi... - gi\|166011303\|ref\|ZP_02232201.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. E1979001],... gi\|166214044, gi... - gi\|166214044\|ref\|ZP_02240079.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. B42003004]... gi\|167049370, gi... - gi\|167401345\|ref\|ZP_02306845.1\| ribosomal protein S6 [Yersinia pestis biovar Antiqua str. UG05-0454]... RS6_YERE8 - 30S ribosomal protein S6 OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8... gi\|165937530, gi... - gi\|89102329\|ref\|ZP_01174971.1\| COG0360: Ribosomal protein S6 [Yersinia pestis biovar Orientalis str.... RS6_YERPA - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rpsF PE=3 SV=1 RS6_YERPN - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rpsF PE=3 SV=1 gi\|149288953, gi... - gi\|153997316\|ref\|ZP_02022416.1\| 30S ribosomal protein S6 [Yersinia pestis CA88-4125], gi\|149288953\|g... gi\|45435253, gi\|... - gi\|45440396\|ref\|NP_991935.1\| 30S ribosomal protein S6 [Yersinia pestis biovar Microtus str. 91001], ... gi\|22124559, gi\|... - gi\|22124559\|ref\|NP_667982.1\| 30S ribosomal protein S6 [Yersinia pestis KIM], gi\|21957359\|gb\|AAM84233... gi\|15981463, gi\|... - gi\|218930553\|ref\|YP_002348428.1\| 30S ribosomal protein S6 [Yersinia pestis CO92], gi\|16123685\|ref\|NP... RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rpsF PE=3 SV=... gi\|77961292 - gi\|77961292\|ref\|ZP_00825133.1\| COG0360: Ribosomal protein S6 [Yersinia mollaretii ATCC 43969] RS6_YERPS - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis GN=rpsF PE=3 SV=1 gi\|77958749 - gi\|77958749\|ref\|ZP_00822777.1\| COG0360: Ribosomal protein S6 [Yersinia bercovieri ATCC 43970] RS6_YERPG - 30S ribosomal protein S6 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=rpsF PE=3 SV=1 RS6_YERP3 - 30S ribosomal protein S6 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rpsF PE=3... RS6_YERPE - 30S ribosomal protein S6 OS=Yersinia pestis GN=rpsF PE=3 SV=1 gi\|77973976 - gi\|77973976\|ref\|ZP_00829519.1\| COG0360: Ribosomal protein S6 [Yersinia frederiksenii ATCC 33641] gi\|77977622 - gi\|77977622\|ref\|ZP_00833066.1\| COG0360: Ribosomal protein S6 [Yersinia intermedia ATCC 29909] gi\|229899757, gi... - gi\|229899757\|ref\|ZP_04514898.1\| 30S ribosomal subunit protein S6 [Yersinia pestis biovar Orientalis ...	157.0	[0..1]	[122..1]
RS6_BURXL - 30S ribosomal protein S6 OS=Burkholderia xenovorans (strain LB400) GN=rpsF PE=3 SV=1 RS6_BURPP - 30S ribosomal protein S6 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsF PE=3 SV=1 gi\|170692292, gi... - gi\|170692292\|ref\|ZP_02883455.1\| ribosomal protein S6 [Burkholderia graminis C4D1M], gi\|170142722\|gb\|...	157.0	[0..1]	[118..1]
RS6_NITEU - 30S ribosomal protein S6 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rpsF PE=3 SV=1 RS6_NITEU - 30S ribosomal protein S6 OS=Nitrosomonas europaea GN=rpsF PE=3 SV=1	157.0	[0..1]	[122..1]
RS6_RALSO - 30S ribosomal protein S6 OS=Ralstonia solanacearum GN=rpsF PE=3 SV=1 RS6_RALSO - 30S ribosomal protein S6 OS=Ralstonia solanacearum (strain GMI1000) GN=rpsF PE=3 SV=1	155.0	[0..1]	[121..1]
RS6_METFK - 30S ribosomal protein S6 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsF ...	155.0	[0..1]	[113..1]
EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts RS6_ECOLI - 30S ribosomal protein S6 [Contains: 30S ribosomal protein S6, fully modified isoform; 30S ribosomal ... EG10905 - 30S ribosomal subunit protein S6 / 30S ribosomal subunit protein S6; suppressor of dnaG-Ts	155.0	[0..1]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEIVFIV HPDQSEQVPA MVERYKTMIA EANGKIHRLE DWGRRQLAYP INKIHKAHYV  60
   61 LMNIETTPEV VEELETAFRF NDAILRHLTI KTKHAVTEAS PMLGGEKAKN LLSGASEEAV 120
  121 AQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.76170790689216	bayes_pls_golite062009
structural molecule activity	3.47672166437086	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: