YRC Public Data Repository - Protein Structure Prediction

Protein:	RS4_AQUAE
Organism:	Aquifex aeolicus
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS4_AQUAE.

Description	E-value	Query Range	Subject Range
RR4_FUNHY - 30S ribosomal protein S4, chloroplastic OS=Funaria hygrometrica GN=rps4 PE=3 SV=1	304.0	[0..1]	[210..1]
RR4_PHYPA - 30S ribosomal protein S4, chloroplastic OS=Physcomitrella patens subsp. patens GN=rps4 PE=3 SV=1 RR4_PHYPA - 30S ribosomal protein S4, chloroplastic OS=Physcomitrella patens subsp. patens GN=rps4 PE=3 SV=1	302.0	[0..1]	[210..1]
gi\|63101091 - gi\|63101091\|gb\|AAY33170.1\| small ribosomal protein 4 [Platyneuron laticostatum]	301.0	[0..1]	[210..1]
RR4_CYABU - 30S ribosomal protein S4, chloroplastic OS=Cyathophorum bulbosum GN=rps4 PE=3 SV=1	301.0	[0..1]	[210..1]
gi\|63191663 - gi\|63191663\|gb\|AAY34793.1\| small ribosomal protein subunit 4 [Dixonia thamnioides]	301.0	[0..1]	[210..1]
RR4_DIPFO - 30S ribosomal protein S4, chloroplastic OS=Diphyscium foliosum GN=rps4 PE=3 SV=1	300.0	[0..1]	[210..1]
gi\|3098148 - gi\|3098148\|gb\|AAC15522.1\| small ribosomal protein 4 [Encalypta rhaptocarpa]	299.0	[0..4]	[210..1]
gi\|29422405 - gi\|29422405\|gb\|AAO84598.1\| small ribosomal protein 4 [Breutelia chrysocoma]	299.0	[0..4]	[210..2]
RR4_HYLSP - 30S ribosomal protein S4, chloroplastic OS=Hylocomium splendens GN=rps4 PE=3 SV=1	299.0	[0..1]	[210..1]
RR4_LEUSC - 30S ribosomal protein S4, chloroplastic OS=Leucodon sciuroides GN=rps4 PE=3 SV=1	299.0	[0..1]	[210..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRYIGPWVK LDRRFGVVVS GKKSAPKILA RRNYPPGQHG RKYGRRKKLT EYGLRLMEKQ  60
   61 KLKFLYGGLR EKQFKKYFDM ASKSKENTGE MLLQYLERRL DNVVYRLGFA STRRQARQLV 120
  121 AHGHVLVNGK KVNIPSYLVE PGDVIEIKEK SRDIPFIKEN LENVDPRSIP SWLELDKDNF 180
  181 RGRVVRLPEN VQEYLEIPIN LQYIVEFYSK V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.522879
Match:	1vs5D
Description:	No description for 1vs5D was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.39690558966302	bayes_pls_golite062009
structural molecule activity	8.82127733244958	bayes_pls_golite062009
RNA binding	1.78858120096157	bayes_pls_golite062009
nucleic acid binding	1.46320109129014	bayes_pls_golite062009
binding	1.39612080445111	bayes_pls_golite062009
protein binding	0.355025246110141	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: