| Protein: | RS40_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 350 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS40_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
247.0 | [0..3] | [350..192] |
|
Region A: Residues: [1-173] |
1 11 21 31 41 51
| | | | | |
1 MKPVFCGNFE YDAREGDLER LFRKYGKVER VDMKAGFAFV YMEDERDAED AIRALDRFEF 60
61 GRKGRRLRVE WTKSERGGDK RSGGGSRRSS SSMRPSKTLF VINFDADNTR TRDLEKHFEP 120
121 YGKIVNVRIR RNFAFIQYEA QEDATRALDA SNNSKLMDKV ISVEYAVKDD DAR
|
| Detection Method: |  |
| Confidence: | 37.522879 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [174-298] |
1 11 21 31 41 51
| | | | | |
1 GNGHSPERRR DRSPERRRRS PSPYKRERGS PDYGRGASPV AAYRKERTSP DYGRRRSPSP 60
61 YKKSRRGSPE YGRDRRGNDS PRRRERVASP TKYSRSPNNK RERMSPNHSP FKKESPRNGV 120
121 GEVES
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [299-350] |
1 11 21 31 41 51
| | | | | |
1 PIERRERSRS SPENGQVESP GSIGRRDSDG GYDGAESPMQ KSRSPRSPPA DE
|
| Detection Method: | |
| Confidence: | 11.045757 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
