YRC Public Data Repository - Protein Structure Prediction

Protein:	RS2_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS2_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|116629458, gi... - gi\|116629458\|ref\|YP_814630.1\| 30S ribosomal protein S2 [Lactobacillus gasseri ATCC 33323], gi\|116095...	341.0	[0..1]	[260..11]
RS2_ANAVT - 30S ribosomal protein S2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsB PE=3 SV=1	332.0	[0..1]	[262..1]
RS2_LACJO - 30S ribosomal protein S2 OS=Lactobacillus johnsonii GN=rpsB PE=3 SV=1 RS2_LACJO - 30S ribosomal protein S2 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 / NCC 533) GN=rpsB PE... gi\|227890237, gi... - gi\|227890237\|ref\|ZP_04008042.1\| 30S ribosomal protein S2 [Lactobacillus johnsonii ATCC 33200], gi\|22...	331.0	[0..1]	[260..1]
gi\|25294462 - pir\|\|AH2404 30S ribosomal protein S2 [imported] - Nostoc sp. (strain PCC 7120) RS2_NOSS1 - 30S ribosomal protein S2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpsB PE=3 SV=1	331.0	[0..1]	[262..1]
gi\|254045811, gi... - gi\|254556884\|ref\|YP_003063301.1\| 30S ribosomal protein S2 [Lactobacillus plantarum JDM1], gi\|2540458... RS2_LACPL - 30S ribosomal protein S2 OS=Lactobacillus plantarum GN=rpsB PE=3 SV=1 RS2_LACPL - 30S ribosomal protein S2 OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=rp... gi\|227856874, gi... - gi\|227894840\|ref\|ZP_04012645.1\| 30S ribosomal protein S2 [Lactobacillus plantarum subsp. plantarum A...	330.0	[0..1]	[268..1]
RS2_PEDAC - 30S ribosomal protein S2 OS=Pediococcus acidilactici GN=rpsB PE=3 SV=1	328.0	[0..1]	[262..1]
RS2_LACS1 - 30S ribosomal protein S2 OS=Lactobacillus salivarius (strain UCC118) GN=rpsB PE=3 SV=1	328.0	[0..1]	[266..1]
gi\|53688528 - gi\|53688528\|ref\|ZP_00110656.2\| COG0052: Ribosomal protein S2 [Nostoc punctiforme PCC 73102]	328.0	[0..1]	[261..55]
gi\|67922290, gi\|... - gi\|67922290\|ref\|ZP_00515803.1\| Ribosomal protein S2, bacterial and organelle form [Crocosphaera wats...	327.0	[0..1]	[243..1]
RS2_PEDPA - 30S ribosomal protein S2 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsB PE=3 SV=1	326.0	[0..1]	[262..1]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVVSLADLL ESGVHFGHQT RRWNPRMDQY IYTARNGVHI IDLVQTAQLM EDAYEYVRSS  60
   61 TINGKKFLFV GTKRQAAGII SQEAQRCGAH YVNQRWLGGM LTNWETIRKR VDRLKELEAL 120
  121 EASGGIDRRG KKEGSMLRRE LGKLQKYLGG IKNMRKLPDV VVIVDQRREH NAIHECQKLG 180
  181 IPIIAMLDTN CDPDVVDVPI PANDDAIRSI KLIVGKLADA IYEGRHGQPD VSDDYEEFDE 240
  241 GLDGDNLEVE AAEEVEEAAE AEVAATPEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.522879
Match:	1vs5B
Description:	No description for 1vs5B was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.68569821712377	bayes_pls_golite062009
structural molecule activity	9.23086340425923	bayes_pls_golite062009
RNA binding	0.825542354503353	bayes_pls_golite062009
binding	0.775544224160057	bayes_pls_golite062009
nucleic acid binding	0.508540596559858	bayes_pls_golite062009
protein binding	0.156148644279823	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: