YRC Public Data Repository - Protein Structure Prediction

Protein:	RS26_OCTVU
Organism:	Octopus vulgaris
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS26_OCTVU.

Description	E-value	Query Range	Subject Range
gi\|109478147 - gi\|109478147\|ref\|XP_216698.3\| PREDICTED: similar to 40S ribosomal protein S26 [Rattus norvegicus]	194.0	[0..4]	[102..102]
gi\|41152199, gi\|... - gi\|41152199\|ref\|NP_957036.1\| ribosomal protein S26 [Danio rerio], gi\|37748252\|gb\|AAH59532.1\| Ribosom...	191.0	[0..1]	[114..1]
gi\|15294063 - gi\|15294063\|gb\|AAK95208.1\|AF402834_1 40S ribosomal protein S26-1 [Ictalurus punctatus]	189.0	[0..1]	[114..1]
gi\|114621444, gi... - gi\|55631132\|ref\|XP_519920.1\| PREDICTED: similar to 40S ribosomal protein S26-2 isoform 2 [Pan troglo...	188.0	[0..1]	[114..1]
gi\|50416640, gi\|... - gi\|52346158\|ref\|NP_001005121.1\| ribosomal protein S26 [Xenopus (Silurana) tropicalis], gi\|50416640\|g...	185.0	[0..1]	[114..1]
gi\|61826195 - gi\|61826195\|ref\|XP_601973.1\| PREDICTED: similar to 40S ribosomal protein S26 [Bos taurus]	185.0	[0..1]	[114..1]
gi\|47229575 - gi\|47229575\|emb\|CAG06771.1\| unnamed protein product [Tetraodon nigroviridis]	184.0	[0..2]	[114..1]
gi\|50604177, gi\|... - gi\|50604177\|gb\|AAH77637.1\| MGC86356 protein [Xenopus laevis], gi\|148230110\|ref\|NP_001086904.1\| MGC86...	184.0	[0..1]	[113..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKRRNNGR GKKGRGHVKY IRCTNCARCV PKDKAIKKFV IRNIVEAAAV RDISDASVYE  60
   61 VYALPKLYAK LLYCVSCAIH SKIVRNRSRE ARKDRTPPIR FRPMRGEGGQ NARPGQANKL 120
  121 FNMSPRK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.60206
Match:	PF01283.10
Description:	No description for PF01283.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits