YRC Public Data Repository - Protein Structure Prediction

Protein:	RS25_SOLLC
Organism:	Solanum lycopersicum
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS25_SOLLC.

Description	E-value	Query Range	Subject Range
gi\|109018521 - gi\|109018521\|ref\|XP_001108187.1\| PREDICTED: similar to 40S ribosomal protein S25 [Macaca mulatta]	146.0	[0..4]	[107..192]
gi\|114572319 - gi\|114572319\|ref\|XP_514173.2\| PREDICTED: similar to ribosomal protein S25 [Pan troglodytes]	144.0	[0..6]	[107..76]
gi\|125778350, gi... - gi\|54639683\|gb\|EAL29085.1\| GA19768-PA [Drosophila pseudoobscura], gi\|125778350\|ref\|XP_001359933.1\| G...	142.0	[0..1]	[107..1]
gi\|73955048 - gi\|73955048\|ref\|XP_536549.2\| PREDICTED: similar to 40S ribosomal protein S25 [Canis familiaris]	141.0	[0..12]	[107..93]
gi\|108884721, gi... - gi\|157103245\|ref\|XP_001647889.1\| ribosomal protein S25, putative [Aedes aegypti], gi\|157103243\|ref\|X...	135.0	[0..1]	[107..83]
gi\|47188265 - gi\|47188265\|emb\|CAF87311.1\| unnamed protein product [Tetraodon nigroviridis]	132.0	[0..32]	[107..52]
gi\|76634248 - gi\|76634248\|ref\|XP_610130.2\| PREDICTED: similar to 40S ribosomal protein S25 [Bos taurus]	130.0	[0..1]	[100..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKKAQAPP PSSKPAKSGG GKQKKKKWSK GKQKEKVNNM VLFDKSTYDK LLSEAPKYKL  60
   61 ITPSVLSDRL RISGSLARKA IRDLMARGSI RMVSAHASQQ IYTRATNT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.12
Match:	2j5oA
Description:	No description for 2j5oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits