YRC Public Data Repository - Protein Structure Prediction

Protein:	RS24_ORYLA
Organism:	Oryzias latipes
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS24_ORYLA.

Description	E-value	Query Range	Subject Range
gi\|114631371 - gi\|114631371\|ref\|XP_001150938.1\| PREDICTED: hypothetical protein LOC466117 isoform 5 [Pan troglodyte...	232.0	[0..1]	[130..1]
gi\|71013789, gi\|... - gi\|71013789\|ref\|XP_758662.1\| hypothetical protein UM02515.1 [Ustilago maydis 521], ref\|XP_400130.1\| ...	209.0	[0..2]	[132..16]
gi\|109114380 - gi\|109114380\|ref\|XP_001102133.1\| PREDICTED: similar to ribosomal protein S24 isoform 2 [Macaca mulat...	207.0	[0..1]	[130..1]
gi\|69608495 - gi\|69608495\|emb\|CAJ01865.1\| ribosomal protein S24e [Carabus granulatus]	204.0	[0..2]	[131..3]
gi\|37779110 - gi\|37779110\|gb\|AAP20215.1\| 40S ribosomal protein S24 [Pagrus major]	204.0	[0..1]	[131..1]
gi\|69608499 - gi\|69608499\|emb\|CAJ01866.1\| ribosomal protein S24e [Meladema coriacea]	203.0	[0..2]	[131..3]
RS24_ICTPU - 40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1	202.0	[0..1]	[131..1]
RS24_TAKRU - 40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1	202.0	[0..1]	[132..1]

Back

Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDTVTIRTR KFMTNRLLQR KQMVVDVLHP GKATVPKTEI REKLAKMYKT TPDVVFVFGF  60
   61 RTQFGGGKTT GFAMVYDSLD YAKKNEPKHR LATHGLYEKK KTSRKQRTER QNRMKKVRSI 120
  121 KKASVGAAGK KN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1xn9A
Description:	Solution Structure of Methanosarcina mazei Protein RPS24E: The Northeast Structural Genomics Consortium Target MaR11
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits