YRC Public Data Repository - Protein Structure Prediction

Protein:	RS21_NEUCR
Organism:	Neurospora crassa
Length:	87 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS21_NEUCR.

Description	E-value	Query Range	Subject Range
gi\|50758757 - gi\|50758757\|ref\|XP_417405.1\| PREDICTED: similar to ribosomal protein S21; 40S ribosomal protein S21 ...	166.0	[0..1]	[83..79]
RS21_KLULA - 40S ribosomal protein S21 OS=Kluyveromyces lactis GN=RPS21 PE=3 SV=1 RS21_KLULA - 40S ribosomal protein S21 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 12...	165.0	[0..1]	[87..1]
gi\|190409870 - gi\|190409870\|gb\|EDV13135.1\| ribosomal protein S21A [Saccharomyces cerevisiae RM11-1a] RPS21A - Protein component of the small (40S) ribosomal subunit; nearly identical to Rps21Bp and has similari... RS21A_YEAST - 40S ribosomal protein S21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS21A PE=1 ... gi\|151941597 - gi\|151941597\|gb\|EDN59960.1\| ribosomal protein S21A [Saccharomyces cerevisiae YJM789]	164.0	[0..1]	[87..1]
gi\|46107830, gi\|... - gi\|46107830\|ref\|XP_380974.1\| RS21_NEUCR 40S ribosomal protein S21 (CRP7) [Gibberella zeae PH-1], gi\|...	164.0	[0..1]	[87..1]
RS21_ASHGO - 40S ribosomal protein S21 OS=Ashbya gossypii GN=RPS21 PE=3 SV=1 RS21_ASHGO - 40S ribosomal protein S21 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-10...	163.0	[0..1]	[87..1]
rps21 - 40S ribosomal protein S21 RS21_SCHPO - 40S ribosomal protein S21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps21 PE=1 SV=2	162.0	[0..1]	[87..1]
RS21_CANGA - 40S ribosomal protein S21 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / N... RS21_CANGA - 40S ribosomal protein S21 OS=Candida glabrata GN=RPS21 PE=3 SV=1	160.0	[0..1]	[87..1]
gi\|61369987 - gi\|61369987\|gb\|AAX43423.1\| ribosomal protein S21 [synthetic construct]	160.0	[0..1]	[81..1]
gi\|73992422 - gi\|73992422\|ref\|XP_543084.2\| PREDICTED: similar to ribosomal protein S21 isoform 1 [Canis familiaris... RS21_BOVIN - 40S ribosomal protein S21 OS=Bos taurus GN=RPS21 PE=3 SV=1 RPS21 - ribosomal protein S21 gi\|114685480, gi... - gi\|114685480\|ref\|XP_514766.2\| PREDICTED: similar to ribosomal protein S21 isoform 3 [Pan troglodytes... ENSCJAT00000027617 - null RS21_PIG - 40S ribosomal protein S21 OS=Sus scrofa GN=RPS21 PE=1 SV=1	160.0	[0..1]	[83..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENDRGEIVD LYVPRKCSAT GRIIKSKDHG SCQITIAKVD ENGRAIQGEN IIYALSGFVR  60
   61 AMGESDDSLN RLAQRDGLLK AVWNPQR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.0
Match:	PF01249.9
Description:	No description for PF01249.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.504	N/A	N/A	b.61.8	Description not found.
View	Download	0.498	N/A	N/A	a.60.5	Barrier-to-autointegration factor, BAF
View	Download	0.498	N/A	N/A	a.60.5	Barrier-to-autointegration factor, BAF
View	Download	0.436	N/A	N/A	a.130.1	Chorismate mutase II
View	Download	0.391	N/A	N/A	b.61.8	Description not found.
View	Download	0.365	N/A	N/A	d.15.13	Description not found.
View	Download	0.352	N/A	N/A	d.58.12	eEF-1beta-like
View	Download	0.346	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.337	N/A	N/A	a.65.1	Annexin
View	Download	0.310	N/A	N/A	b.84.2	Rudiment single hybrid motif

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits