YRC Public Data Repository - Protein Structure Prediction

Protein:	RS20_XENLA
Organism:	Xenopus laevis
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS20_XENLA.

Description	E-value	Query Range	Subject Range
gi\|114620182 - gi\|114620182\|ref\|XP_001154691.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	156.0	[0..1]	[119..10]
gi\|50801483 - gi\|50801483\|ref\|XP_428540.1\| PREDICTED: similar to putative 40S ribosomal protein 20S protein, parti...	155.0	[0..2]	[119..45]
gi\|60653017 - gi\|60653017\|gb\|AAX29203.1\| ribosomal protein S20 [synthetic construct]	153.0	[0..1]	[119..1]
tr\|G1SIZ2\|G1SIZ2... - pep:known chromosome:oryCun2:3:71607725:71609256:-1 gene:ENSOCUG00000003068 transcript:ENSOCUT000000... RS20_BOVIN - 40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1 gi\|149721389 - gi\|149721389\|ref\|XP_001497631.1\| PREDICTED: similar to ribosomal protein S20 [Equus caballus] gi\|73999396, gi\|... - gi\|73999396\|ref\|XP_535079.2\| PREDICTED: similar to 40S ribosomal protein S20 [Canis familiaris], gi\|... gi\|109086434, gi... - gi\|109086436\|ref\|XP_001085267.1\| PREDICTED: similar to 40S ribosomal protein S20 isoform 2 [Macaca m... RS20_MACFA - 40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1 gi\|124000063, gi... - gi\|60656093\|gb\|AAX32610.1\| ribosomal protein S20 [synthetic construct], gi\|208967328\|dbj\|BAG73678.1\|... gi\|57720 - gi\|57720\|emb\|CAA35917.1\| unnamed protein product [Rattus rattus] RS20_RAT - 40S ribosomal protein S20 OS=Rattus norvegicus GN=Rps20 PE=3 SV=1 RS20_MOUSE - 40S ribosomal protein S20 OS=Mus musculus GN=Rps20 PE=1 SV=1 tr\|M3XBC9\|M3XBC9... - Ribosomal protein S20 OS=Felis catus GN=RPS20 PE=3 SV=1 RPS20 - ribosomal protein S20 gi\|114620190, gi... - gi\|114620194\|ref\|XP_001154632.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes], gi\|114...	153.0	[0..1]	[119..1]
gi\|109477450, gi... - gi\|62649765\|ref\|XP_575923.1\| PREDICTED: similar to 40S ribosomal protein S20 [Rattus norvegicus], re...	152.0	[0..1]	[119..1]
gi\|225708256 - gi\|225708256\|gb\|ACO09974.1\| 40S ribosomal protein S20 [Osmerus mordax] gi\|213511786, gi... - gi\|223672421\|gb\|ACN12392.1\| 40S ribosomal protein S20 [Salmo salar], gi\|223672103\|gb\|ACN12233.1\| 40S... gi\|185135786, gi... - gi\|225703740\|gb\|ACO07716.1\| 40S ribosomal protein S20 [Oncorhynchus mykiss], gi\|185135786\|ref\|NP_001...	152.0	[0..1]	[119..1]
gi\|15294053 - gi\|15294053\|gb\|AAK95203.1\|AF402829_1 40S ribosomal protein S20 [Ictalurus punctatus]	152.0	[0..1]	[119..1]
RS20_PONAB - 40S ribosomal protein S20 OS=Pongo abelii GN=RPS20 PE=3 SV=1 RS20_PONPY - 40S ribosomal protein S20 - Pongo pygmaeus (Orangutan)	152.0	[0..1]	[119..1]
gi\|109074773 - gi\|109074773\|ref\|XP_001086172.1\| PREDICTED: similar to 40S ribosomal protein S20 [Macaca mulatta]	152.0	[0..1]	[119..1]
gi\|38328393, gi\|... - gi\|47086001\|ref\|NP_998369.1\| ribosomal protein S20 [Danio rerio], gi\|38328393\|gb\|AAH62282.1\| Ribosom...	150.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKDPGKAP VDQEVAIHRI RITLTSRNVK SLEKVCADLI RGAKEKNLKV KGPVRMPTKT  60
   61 LRITTRKTPC GEGSKTWDRF QMRIHKRLID LHSPSEIVKQ ITSISIEPGV EVEVTIADA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.522879
Match:	1s1hJ
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits